Array 1 165912-167516 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKN02000005.1 Limnohabitans sp. Rim28 LimC-Rim28-C5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 165912 32 100.0 33 ................................ CCAGATCACACTTGCTATGTCGAGGTGTTTGCG 165977 32 100.0 33 ................................ CCCTTTGCTGGCAAGCAAATAGCCGTTGATCGT 166042 32 100.0 34 ................................ GACAGTGCCCGACCAAAACGGTCTGACATGCAAA 166108 32 100.0 33 ................................ TTCGTCAATCCAGGTGTCGCTGGCGTCAGACGT 166173 32 100.0 34 ................................ AAGGCTATCAAAAAACGGCCTTGATTGCCACCAA 166239 32 100.0 34 ................................ ACGCTGGAGCTGTATGCGGGCGAAGACCGTGCAA 166305 32 100.0 33 ................................ TGTCGTGGCCGCCTCAAGCTGGGCTTTGAGGGC 166370 32 100.0 33 ................................ ACGCCACCGGTGTGGAGGTCATCGCGCCGCCGC 166435 32 100.0 33 ................................ GTGTTGAGGCCTCCAGTACCGCTCTGATGCGAA 166500 32 100.0 33 ................................ GCGTTGGAGTTTGCCGTGTTCGCGGTGGTGTTG 166565 32 100.0 34 ................................ GCCGTGGCTGTGGCGCGCGGCAAGGCCAAAATCA 166631 32 100.0 33 ................................ GCAGCGGTGCAAAGCGCAGCAGCCGAAGCACAA 166696 32 100.0 34 ................................ TATCCAAGTCGATCCACCGTCTGTGGATGTCCAG 166762 32 100.0 33 ................................ TTTGCCCACCATGGCCTGAGTTGCCGCCAGTGG 166827 32 100.0 34 ................................ CTGTCATATGCCCAAAATTCCACAGACCAAGAGC 166893 32 100.0 35 ................................ CTGCGCTACTGGCAACAAAGCACAGACGACGCGAT 166960 32 100.0 33 ................................ ATGTCCTCAAACATGGCCATGACACCAGCCTCC 167025 32 100.0 34 ................................ ATGCTCCACAAAAGCGAAGAGCGCTACCTGGACG 167091 32 100.0 34 ................................ GATCCATTGCCCCCGTTGTAAGACACATTGCGAA 167157 32 100.0 33 ................................ ACCCAGGTCGCCATCTTGCAAAACGGTGTGGCG 167222 32 100.0 34 ................................ TTCGTGCAGCTGGGTCATGGGGTTGAGGCCACGC 167288 32 100.0 35 ................................ AGGTCGGTGACAGACCAGGTGGTCAGCCTGCAAAA 167355 32 100.0 33 ................................ CGGTGCGGTAAAACGCACGCCCTTGTCTGCCCC 167420 32 96.9 33 ...................T............ AGTTTTTCCTCTCGACCCCTGCCAAGTGGAAAA 167485 32 90.6 0 ...A............C..........A.... | ========== ====== ====== ====== ================================ =================================== ================== 25 32 99.5 34 GTCGCCCCTCATGCAGGGGCGTGGATTGAAAC # Left flank : CTACACGCCATTTGCAGTGAGGTGATCGCATGTTGATGCTGGTGACCTATGACGTGAACGTGACCACCCGTGCGGGGGAACGGCGCTTGCGTCACATCGCCAAAGTCTGTTTGGACCATGGCGTGCGCGTGCAAAATTCTGTATTTGAATGCGAAGTTGATCCTGCTCAGTGGGTTCAATTCAAGGCTGAGTTGTTGCGCATTTATGACCCGAACCAGGACAGTTTGCGGTTTTATTCGCTGGGTAAACGTGGCGTGGAAAAGGTAGAACACTGCGGGGCAAAGCCGACCTTCAACCCGTTGCACAGCACGTTAATTTTGTAGCGCTAACCCTGCGCACTCATGTTTTAGCTAAAGGGTTAGCGGTATCTCTAAGCCTTTGATTTTTATCGATTTTTCAATAATCAATTGTTACTTGATTTCGGTTGATTGACTAAAACCAGCCTGGTTAGCGAAATGCGGTCTGAGAAGCCAGTAGTGGCATGGTGTTATCTTAAAGGG # Right flank : CCAAGTGAAGGTTGTTGCAGGGCCAAAACTAAGGTCTCGAGTCATGCAGGGCATTCCAATGATCACTCCACGCCTGTGTTGTTGCCCCAGCAAAACCTCGTTTATAGGCTGCTTCTGTGCAAGGTCACGCGAAGTCCACGATGGATTGTCAATGTCGGGTTTGTGAGACTGAATTTTGGTTTTCTCCTAGCTCCCTGCGTGTATAGCTTGAGCATGTTGTCAAGTTCTTCATGGCGCAGCGCTCAGATAAAAAACAAAAGGCCCGAAGGCCTTTGTCTAAATTTTGGATTCCAAAATTATTGCGAGATTCCGTTACCACTGCGGGTTTGCAGACCTGCATTGCTGCAGGCGGCTGGTTCGTTTACGCACTCGCTCTCGAACCGTCTTTCAAAGAGTTTAGCAAACGAAGATCAGGTTTGGTCTGACGCCGTTTGCTGGGGTGCTTAGGCCTTTGCCGCCTGCTGCGCCTTGTGTACCAGCTTGCGCGCCATGCTCCAGCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCATGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //