Array 1 24104-22673 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSKS01000026.1 Bacteroides intestinalis strain AM27-2 AM27-2.Scaf26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 24103 47 89.4 30 ......G.C...........A...................A.....T GCTGATGTGTTTGAGATAGAATACACCAAG 24026 47 100.0 30 ............................................... ACGAAAGACATCGTAGATAAACCCTTTCTC 23949 47 100.0 30 ............................................... GACATCATAACCAATCCGACACCGGAAGAT 23872 47 100.0 30 ............................................... TTCAATTCAAAGTTAAGTTCTTTGGTACAA 23795 47 100.0 30 ............................................... CCCCATTCATTCGTACCGTTAATCATTTCT 23718 47 100.0 30 ............................................... GAGAATCCCGTACCTGTTACGGACACAGTA 23641 47 100.0 30 ............................................... ATTCTTAGCGGAATAACCTGTTATCTTGGT 23564 47 100.0 30 ............................................... GAACAAAGGCTCAGGGAGCTCCATACGGGT 23487 47 100.0 30 ............................................... ATGTATGGACGCATTGAAAGTGGCTGGAAA 23410 47 100.0 30 ............................................... GTGGAGTGATAGTGGAGCCTCTGAGGTAAA 23333 47 100.0 30 ............................................... ACCATCGTTGTCAATGATGAGTATGCCTTT 23256 47 100.0 30 ............................................... AAATACTACGACCTGAAGAACAACACGGCA 23179 47 100.0 30 ............................................... TTGCAACGAGATATTGAAATATTGGTTTCC 23102 47 100.0 30 ............................................... CGCTTCACAAAAAAGGGTACAGGGTGAACA 23025 47 100.0 30 ............................................... TGCGGAGTGTGTGAAGTGAATCAGATACGT 22948 47 100.0 30 ............................................... TCCTCCGTTGCTATATGTAGCGCAATATCC 22871 47 100.0 29 ............................................... AACAAGCTGAAATGGATCAGATCGACGCC 22795 47 100.0 29 ............................................... TAGGGAGTATGTACGATGCTATCCCCAAT 22719 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.4 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Left flank : CAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAGGATGATTATTTGCTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTGCTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAAAAGATAAAATAGATAGGTGAGATTAAGGGATTGAAGAGAGGAGGGGGACGAAAAAGGAAATGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGTGATGATATTTAGGATTAGGTAGGGGCATACTTATTTCTAAAATTATTGAAAATAGTCAAATATTGGCAGGAATGATATGAAATTCTCGTATACTACTTTATTTGAATTATTGTAAATGACTCTGTGTTTGTTTTGCTAGAACCATATTGTAACTGACTTCTATTTAAGTAGAACCATTGGAAACAGTGCATAGTATTCCGTGAGAAGTGCCCCGTC # Right flank : ACGACCTACGTTACATACTGATATCCAATTGGTTACAAACCATTTTTGAATTACAAAAACAATACTGTTTTTAATTAAAAAATCCCGCATTTAAGCGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGGCCGGGAGTATTTATGTCCAAAGATCTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGTCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAGCTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTTTTAAAATCTACATATGCCTTCTTATCCTTCTTTGTTTCAGTAGGTAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATATTATTCTACGTAGTTCACCACTAAAGCATTTATACAGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //