Array 1 164419-162559 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVO01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5505 NODE_7_length_320897_cov_74.393986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164418 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 164357 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 164296 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 164235 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 164174 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 164113 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 164052 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 163991 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 163930 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 163869 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 163808 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 163747 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 163686 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 163625 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 163564 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 163503 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 163442 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 163381 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 163320 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 163259 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 163198 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 163137 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 163076 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 163015 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 162954 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 162893 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 162832 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 162771 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 162710 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 162649 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 162588 29 96.6 0 ............T................ | A [162561] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182971-180991 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVO01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5505 NODE_7_length_320897_cov_74.393986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182970 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 182909 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 182848 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 182787 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 182726 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 182665 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 182604 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 182543 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 182482 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 182421 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 182360 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 182299 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 182238 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 182177 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 182116 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 182055 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 181994 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 181933 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 181872 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 181811 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 181750 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 181689 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 181628 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 181567 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 181506 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 181445 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 181384 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 181323 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 181262 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 181201 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 181140 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 181079 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 181018 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //