Array 1 53488-54415 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWML01000028.1 Pseudomonas aeruginosa strain 4114358565 IPC1507_28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53488 28 100.0 32 ............................ TATCGCCATGGTTACGTCACTCATCGCTGACT 53548 28 100.0 32 ............................ CGGCGCTCCGTTCGACGCGACAAGTCGCGACG 53608 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 53668 28 100.0 32 ............................ ATAGGATGACTTCTGCGGTTGTGAAGTTTTTC 53728 28 100.0 32 ............................ TTGTCTGTCACCGAGTCGACCACACCAGAAGA 53788 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCACCCTCGC 53848 28 100.0 32 ............................ AGGGGGTCAGAGGGCAGGGGGAGAAAAGCTTC 53908 28 100.0 32 ............................ CCAGGCGCCGGCTTCTTCCCAGGTGATGCCGG 53968 28 100.0 32 ............................ AGGATCGCGGCGGAATGATGTCTCGCGCCGAC 54028 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 54088 28 100.0 32 ............................ TTGCTGTGCTTGAAGAAAAGGGGTTCGTCCAA 54148 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 54208 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 54268 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 54328 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 54388 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64289-62940 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWML01000028.1 Pseudomonas aeruginosa strain 4114358565 IPC1507_28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64288 28 100.0 32 ............................ TGGCGAACGATGGCGCACTGGATTGCGTCGCC 64228 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 64168 28 100.0 33 ............................ ATAGCGGAAGTAGATCGCGTCCGCGGGTTCAAA 64107 28 100.0 32 ............................ AATTATCAGACTGCTGCGAACAACGTGAACAA 64047 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 63987 28 100.0 32 ............................ CGCAGCGCAGGGCATTGATCAGTGCCGCCCGG 63927 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 63867 28 100.0 32 ............................ TTGTCGCTTCCAATTAGGCCGGCGCGCTTCTT 63807 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 63747 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 63687 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 63627 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 63567 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 63507 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 63447 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 63387 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 63327 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 63267 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 63207 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 63147 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 63087 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 63027 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 62967 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //