Array 1 35642-34616 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MSTR01000002.1 Enterococcus mundtii strain CGB1038-1_S1 NODE_2_length_330118_cov_74.5501, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     35641	    36	 100.0	    30	....................................	TTTCATTTTGGAACTTTTTGTGTACCTTTT	
     35575	    36	 100.0	    30	....................................	TCCACTTGACGTACGACCAAGTAATTTACT	
     35509	    36	 100.0	    30	....................................	ATTGACAAAGAGTATAAGTTCACATGGACT	
     35443	    36	 100.0	    30	....................................	TAGAAATCTATAATATATTTTGTGTACCTT	
     35377	    36	 100.0	    30	....................................	AAAAAGACACGACCGCCGACAAGCATGATC	
     35311	    36	 100.0	    30	....................................	CAACTTAATTATTGTGAGTTATGCTGACAG	
     35245	    36	 100.0	    30	....................................	CCTGTACCTGTTAATCCTTTTAGCTTACTT	
     35179	    36	 100.0	    30	....................................	TCCACATCAAACATTGTAATATAGTGACCT	
     35113	    36	 100.0	    30	....................................	CTACCTAAACGCTATTGCCCTGAACATGAG	
     35047	    36	  97.2	    30	.............A......................	TTCTATAACTTTTTATATCCATTGAAGTCA	
     34981	    36	 100.0	    30	....................................	AATTGAACGTGTTGCTGGTATTGTTACGCC	
     34915	    36	 100.0	    30	....................................	CTACACCATAATTATCATCTCTAGCAGACT	
     34849	    36	 100.0	    30	....................................	GATTAGTTCTTTCAATGCTTCTTCCACGAT	
     34783	    36	 100.0	    30	....................................	TCAATTTTGTGAATCTTATGGCTATAGTCA	
     34717	    36	 100.0	    30	....................................	TACCTTCTGGTACATGAAGTTCCCTAACAA	
     34651	    36	  91.7	     0	..........................T......T.G	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.3	    30	GTTTTAGAGCTATGTTGAATTGAATGCTTCCAAAAC	                              	       

# Left flank :   AGACAATTGAACGAAAAGCCAGAAGTGAAGTCGATGATCACTAAATTGACAGATACGATCAGTGAACTGATTGAGTATGAATTATTAGACCATGAGATGGACTTGGAAAGTGATGAGATCACGATTTTAGAATTATTCAAGGCGTTAGGAGTCAAAATAGAAACGACGAGTGATACGATTTATGAAAAAATAATCGAGATTTTACAAGTATTTAAGTATCTGACAAAAAAGAAACTATTAATCTTTATCAATGTTTGTTCGTATTTAACGTTGAAAGAAATAGAAGAAATACGATCTTATATTTCTTTATGTAACATGGATGTTCTTTTTATCGAACCAAGAAAAATTTCAGGAATCACACAAACAATCTTAGATAATGATTATTTTTTAATAGATGGTAGTATGGTAGAATAAAAGAAAATAAGTATTCAATTCTGAAGTTTTGCTATGAATGAATCGCGCGATTACGAAACTTTGTCAGAAAAAATTTTTTCTACGAG
# Right flank :  AGTATAAGAGTCCACTACACTATGAACGTTTTTAAATCTATATTGAATTGTCTGCCATTACTAGCTATACTGGATCTCAGTAAAAAGATGATAGTGGGATTCACTAATAAAAAAGTACAGAGTCAGAAGAAAACACAGACACTTGTGTTTTCTTTTTTTGCTCAAACTGGACGAAACTCTTTACTCTTAGTAGGATAGGAGTAGAAGAAAAAGTGGGGTGTAAAGATGTTTAGTGAAACGTTGGTCCATTTGTTGGAATGGGTGACTGCGATTTTGAATATTTTCTCGATTTTAGTCTTGTTGGTTGGAATTTTTTTAGTTTTAAAAAATTTGATGTTGGAACGTCCACTGATCAAAGATTATGCGACGCGGAATCGGCGGAATGCGGATATTCGAAAACTACTAGCTAGTTACATTTTGTTGAGTTTAGAAGTACTAATCGTGGCAGATCTCATTGAATCTGTCATTAAACCAACTTGGACAGACATTTTAAAATTAGC

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGAATTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//