Array 1 1052-2949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEP010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-24 NODE_102_length_8689_cov_3.584793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1052 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1113 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1174 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1235 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1297 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1358 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1419 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1480 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1541 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1602 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1663 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1724 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1785 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1846 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1907 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1968 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2029 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2090 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2151 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2212 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2270 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2331 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2392 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2453 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2514 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2575 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2636 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2697 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2798 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2859 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2920 29 93.1 0 A...........T................ | A [2946] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30315-31930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-24 NODE_49_length_42341_cov_3.855972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30315 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 30377 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 30438 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 30499 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 30560 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 30621 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 30682 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 30743 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 30804 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 30865 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 30926 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 30987 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 31048 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 31109 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 31170 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 31231 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 31292 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 31353 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 31415 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 31476 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 31537 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 31598 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 31659 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 31720 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 31781 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 31842 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 31903 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //