Array 1 90006-91857 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB372778.1 Wohlfahrtiimonas chitiniclastica SH04 scaffold_00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 90006 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCTCTGTAATATTTTTAATT T [90010] 90208 28 100.0 33 ............................ CTATGCGGCAGTGAACGAAAAAGATCAGCCAGA 90269 28 100.0 32 ............................ TTAACCCCTTTTAAAAACACAGGACGAGAACG 90329 28 100.0 33 ............................ TGAAGAAATGAATGAATTGTTAAATAGAGCTCA 90390 28 100.0 32 ............................ TCAGATCCTTTAGATATATCAGCCAAAGCTGT 90450 28 100.0 32 ............................ AATCATTTCCATATTGGGGTTGATCGTAAAAA 90510 28 100.0 32 ............................ CTTCACCCATCGCCGCACCACGCGCACAGGCT 90570 28 100.0 32 ............................ GTATTCTTTCCATTGATCACCTGTATTGAAAC 90630 28 100.0 32 ............................ AGTAGTTAAAATAAATTTCAATAAAACCACAA 90690 28 100.0 32 ............................ AAGCTAGTATCTCAACACTTAGAAAAGGAACT 90750 28 100.0 32 ............................ TACAACAAATAAGTATTATGCAGGTTCTAATA 90810 28 100.0 32 ............................ TTTGCCGCATTGGTATTCATCGAAAGCACACA 90870 28 100.0 32 ............................ TCACTAATACTTACTTCATTTCTAATCTGATC 90930 28 100.0 32 ............................ CATTTAGCGTGTAAGTATTTTGCGGATATGGC 90990 28 100.0 32 ............................ CCGCTCTTTTTTAGATACAGTTTGCGTAACTG 91050 28 100.0 32 ............................ TCTGAGAAACCTGGCGAGCTTTCTGAGCAACA 91110 28 100.0 32 ............................ TTTAATATCATTATGTTACATCATGACCAAAG 91170 28 100.0 32 ............................ TACTTACGATTTAAAATAAATCTTGAAACTTC 91230 28 100.0 32 ............................ GATTTAAACGCCCAATCTGGCTGATCTTTTTC 91290 28 100.0 32 ............................ AATTCTTGATTGGCGCTTTTCTTCTGTGCTCT 91350 28 100.0 32 ............................ TGAAAGAGATAGATTACACATTCAAAGACAAG 91410 28 100.0 32 ............................ AAAGTGACAGGCATTTTAAAAATGCATTAAAA 91470 28 100.0 32 ............................ TATTGGAGGGTTAGTTGTGAATGAGGCATTAA 91530 28 100.0 32 ............................ TAATTGGAATTGAATAATCATCATCACCTAGA 91590 28 100.0 32 ............................ GTATCAAATCACGTGGTGCACCAAAACCCCTG 91650 28 100.0 32 ............................ TTGCCATGCTTCTAACAGCTCTTGGCGCTGTG 91710 28 100.0 32 ............................ TTATGATGATTTTGAAGCGCAATATAAGTCAT 91770 28 96.4 32 .............C.............. GTGTAGTAACACGGGGGACATGGTGCACTTAA 91830 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 29 28 98.9 37 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGCATCGTCAATGAGGTTAAACATGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTCTCCACGCATTGACATGAACACATAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTTAAACATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAACTAATTCGTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATTCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCTCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCGACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCGGAATGGCGCG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 214049-214976 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB372778.1 Wohlfahrtiimonas chitiniclastica SH04 scaffold_00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214049 28 100.0 32 ............................ TTTTTGCTCGGCATACTCTTTGGCTATAGCAT 214109 28 100.0 32 ............................ TATGCCAATAAATGTTGAACGATTAACTATAT 214169 28 100.0 32 ............................ ACCCGCAACAATTGAAGATATATTATCTCCTA 214229 28 100.0 32 ............................ AATCGTTCCATTGTGAGTATGTCGGTCATTCT 214289 28 100.0 32 ............................ ATTGTTGTCATCTTTTGCTTTTTTATATGCAA 214349 28 100.0 32 ............................ AAAAAGTGTTACTAATGGATTATGGAATGGCC 214409 28 100.0 32 ............................ ACAGGAGCACCTTTATTTGCACCAACAACAAT 214469 28 100.0 32 ............................ ATTTATTTAAAAATAAGGCTCTATTATGAGCC 214529 28 100.0 32 ............................ TATCTGAAGTCCGTGTCTAATCATACTACAAC 214589 28 100.0 32 ............................ AAGACTGCCAAGAAATTCATGAATAGGAGATA 214649 28 100.0 32 ............................ TTTTTGCAAGTAAGTCTGTGCACTTTCAGCTT 214709 28 100.0 32 ............................ TTTATTTTTGCGGGTTTATTATTTGATACTTA 214769 28 100.0 32 ............................ TATTTGCCAATTAATGCTTGATTTTTAACCGT 214829 28 100.0 32 ............................ TTTTTTAGCACCTTTTTCAAGATATTCGCCTA 214889 28 100.0 32 ............................ CATTATGGCTTTAGTAACTATTTTGTCTACCA 214949 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTAACCGCCACATAGGCGGCTTAGAAA # Left flank : TAGATCGATTATTAGATTCTGTTCATATCCAATCAATTAAAGAGGTTCCCTCTAATATTGAAGGATATGCGAAATATTTTTATTGCCGACCAAAAGGGGAATCTCGATTGAGGAAAGAGAAGAAGGGATATGCTGAATACTACGCTCAATCACATTCGGTATCTGTAGATGAGGCTCTATCTCGATATGATGATTGGGAGTTTAAAAAGGTCTATTACCCTTATATTCAGATGAAGAGTCTTCATCGAGATAATTCATTTAAGCTTTTTGTCAAAAAAGAAGTTGTGCAAGAAGAAAATCTAGAAAATAGCACTCATCAGCTATTTACAACTTATGGTTTATCTGCTGGGGGCATTGTTCCTGAGTTTTAACCATTATTTTTTGTTCTTTAAAAATTTGATATAATTCAGTATGTTATAAGAAAGGGGGAAATCATTGGTTTTTTAGGGTGAAATACTCAAGAAATTAGGATTTCTCCCTATTTTGAGCATTTAATCTCA # Right flank : AATATTGGGTCATGAAATGTTAGAAGAACAAAAGTTAACCGCCACATAGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGGTCATGAAATGTTAGAAGAACAAAAGTTAACCGCCACATAGGCGGCTTAGAAAATGCATCAGTGATTTTAATTGTTGCTTCTTCTGTTAACCGCCACATAGGCGGCTTAGAAATGATAAAATTCTTGAAGAGTATGGCGTATTAAGTTAACCGCCACATAGGCGGCTTAGAAATGCTAAAGTACACCAAACCAAACCAATTAAAAGTTAACCGCCACATAGGCGGCTTAGAAAAATTACACCTGATAGCAAACAACAAATTGATTGTTAACCGCCACATAGGCGGCTTAGAAATATTGGCAAGAACCCGCCAATAGTAGGAGCGTGTTAACCGCCACATAGGCGGCTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 215151-216198 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB372778.1 Wohlfahrtiimonas chitiniclastica SH04 scaffold_00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 215151 28 100.0 32 ............................ ATGCATCAGTGATTTTAATTGTTGCTTCTTCT 215211 28 100.0 32 ............................ TGATAAAATTCTTGAAGAGTATGGCGTATTAA 215271 28 100.0 32 ............................ TGCTAAAGTACACCAAACCAAACCAATTAAAA 215331 28 100.0 32 ............................ AATTACACCTGATAGCAAACAACAAATTGATT 215391 28 100.0 32 ............................ TATTGGCAAGAACCCGCCAATAGTAGGAGCGT 215451 28 100.0 32 ............................ AATTGCACGCAAACTAGACATTACTGTTCCAT 215511 28 100.0 32 ............................ AACGGTATATTTATTCTGAAACTCCAATGATT 215571 28 100.0 32 ............................ AACGGTATATTTATTCTGAAACTCCAATGATT 215631 28 100.0 31 ............................ TTACCAATTTTTTCAACAAAAAAATCTGTAA 215691 28 100.0 32 ............................ TACCCATTCACTGAACAACCGCCCTACCGTTG 215751 28 100.0 32 ............................ ATATTTATTCCACGTTTATTTAAATTCATCGC 215811 28 100.0 32 ............................ ATATTTATTCCACGTTTATTTAAATTCATCGC 215871 28 100.0 32 ............................ ATATTTATTCCACGTTTATTTAAATTCATCGC 215931 28 96.4 32 .........T.................. TCAATTCAGCTCTAAAAGTCCTATAAAGTCTT 215991 28 100.0 32 ............................ TTCGTATTCAGAATACTGACAAGCCAAAGCAA 216051 28 100.0 32 ............................ AAGTTATTAAAAATCAATTAGTCAACCTTATG 216111 28 100.0 32 ............................ GCTACTACTGCCCCAGCTCCGCCGCCGGTTCT 216171 28 89.3 0 ..........G..C....A......... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTAACCGCCACATAGGCGGCTTAGAAA # Left flank : TAACCGCCACATAGGCGGCTTAGAAATTTTTGCAAGTAAGTCTGTGCACTTTCAGCTTGTTAACCGCCACATAGGCGGCTTAGAAATTTATTTTTGCGGGTTTATTATTTGATACTTAGTTAACCGCCACATAGGCGGCTTAGAAATATTTGCCAATTAATGCTTGATTTTTAACCGTGTTAACCGCCACATAGGCGGCTTAGAAATTTTTTAGCACCTTTTTCAAGATATTCGCCTAGTTAACCGCCACATAGGCGGCTTAGAAACATTATGGCTTTAGTAACTATTTTGTCTACCAGTTAACCGCCACATAGGCGGCTTAGAAAATATTGGGTCATGAAATGTTAGAAGAACAAAAGTTAACCGCCACATAGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGGGTCATGAAATGTTAGAAGAACAAAA # Right flank : ATTTAAGGGCTGGCTATTTGGCAGCAGATCGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATTGGTATCAATGCAGAAATTGAAAATAAAAATGAGATTTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGCGGGCCTGAGGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //