Array 1 129527-126566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCC010000009.1 Salmonella enterica strain F2-16 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129526 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 129465 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 129404 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 129343 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 129282 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 129221 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 129160 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 129099 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 129038 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 128977 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 128916 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 128855 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 128794 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 128733 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 128672 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 128611 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 128550 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 128489 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 128428 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 128367 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 128306 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 128245 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 128183 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 128122 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 128061 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 128000 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 127939 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 127878 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 127817 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 127756 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 127695 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 127634 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 127573 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 127512 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 127451 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 127390 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 127329 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 127267 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 127206 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 127145 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 127084 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 127023 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 126962 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 126901 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 126840 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 126779 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 126717 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 126656 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 126595 29 96.6 0 ............T................ | A [126568] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147159-145786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCC010000009.1 Salmonella enterica strain F2-16 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147158 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 147097 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 147036 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 146975 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 146914 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 146853 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 146791 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 146730 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 146669 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 146608 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 146547 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 146486 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 146425 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 146363 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 146302 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 146241 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 146179 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 146118 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 146057 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 145996 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 145935 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 145874 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 145813 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //