Array 1 7604-8671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYR01000340.1 Lactobacillus helveticus strain LMG 22465 sequence340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7604 29 96.6 32 ............................C GAGGAGGTGGGTAATTGCAAAGGAAACGAATT 7665 29 100.0 32 ............................. CACTCTGAAATAGCCGGCCTTAACTTTTGAAC 7726 29 96.6 32 ............................C TATTGACGGTCTATTTGAAAATTACTCATACA 7787 29 96.6 33 ............................C GTTATCTTGGTTATGCTGGACTAAACCCTGTTG 7849 29 100.0 32 ............................. TACATCGTAGAAGTAGAGCGTGCCGCCGCTGT 7910 29 100.0 32 ............................. ACCAGGGTGCGGTATTAGTGACAGCGAACTGA 7971 29 96.6 32 ............................C TTTGCTTCTTATACTGAGCTGGATAAGTTCAC 8032 29 100.0 32 ............................. GTATTGCGCAATGGATATTGATGCTCTTGACA 8093 29 100.0 32 ............................. TCCATGACCTTGTTTGTAGAAGAACCAATTGA 8154 29 100.0 32 ............................. CTTCATCTCTAAACATTGCAGCTAAGCCGCCA 8215 29 96.6 32 ............................C TAAGAACAATGCAGAGCTACTTTGCAACAGAG 8276 29 96.6 32 ............................C GATAAGTTGGACGGCCTAGCCGGTTGGTACGA 8337 29 100.0 32 ............................. TAACTAAGTAAAGATTTAATATGTTTTAAAAG 8398 29 100.0 32 ............................. ATTACCGTCAACGTTGTAACCTTTGTAGTTAT 8459 29 100.0 32 ............................. TAAAAACACTATAAAGGAAGTATAACACTATG 8520 29 96.6 32 ............................C CAGTCAAACTATCCGATGGCGACTTTGAAAAG 8581 29 100.0 33 ............................. AAAATAGCGGGCGATCTTTACCGAGAAGTCACG 8643 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGTTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : ACGCAAATGGAAAAAAGAAGCCGACAGATTAGGTATTCTCCACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 515-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYR01000394.1 Lactobacillus helveticus strain LMG 22465 sequence394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 514 29 96.6 32 ............................C TGTCTATAGATCTTAGTAGTGGGCTTTAATGT 453 29 96.6 32 ....................A........ ATGCTCGGCTATACTATCAAGCAAGCTGTATC 392 29 100.0 32 ............................. CTGGTAAATCTAGTGAAGCTTATAAGCGTCAG 331 29 100.0 32 ............................. TTCGGTCGGGCTCTGCATGTTTTGATTACCAG 270 29 96.6 32 ............................C TATCCTGACGATGCACCTGTTAAAAAATTCAG 209 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTAACTTTGGCAATCAATGATTTCTTAGCACTGATGTACTTGCCGTTGCTTAATTTTAAGACTGGAGCACTATCAGTGGGAGTGACCAACTTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGTGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCGAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATA # Right flank : TACAAGTAAGGAATATTGACCGAATCTTTAACTAGAGTTACTGCGAAACATCTGCTATAATCTTAAATTATGAAATACGAAACAGCTAAAAATTTAAACAATACCAGATTCAAGCGTCTGATCGGCGTTGCCAAGCCTGTCTTTGACGAAATGGTCAAAGTATTAAAAGCCGAATATCAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYR01000489.1 Lactobacillus helveticus strain LMG 22465 sequence489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 33 ............................. AAAATAGCGGGCGATCTTTACCGAGAAGTCACG 77 29 100.0 32 ............................. ACGCAAATGGAAAAAAGAAGCCGACAGATTAG 138 29 100.0 32 ............................. ACGCAAATGGAAAAAAGAAGCCGACAGATTAG 199 29 100.0 32 ............................. ATTGGTGCTGTTGCAGTTGTTTCCAATTCCAA 260 29 100.0 32 ............................. AGAAATTAGGAGGTTAAAAATGAAGAAATTTA 321 29 96.6 32 ............................C ACTCTGATTTCACCTGGTCTCATACCAGTGTA 382 29 96.6 32 ............................C TGCAGGACATGCTGCAGCTAACACAACTGTAA 443 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCGACTTTGAAAAGG # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-881 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYR01000586.1 Lactobacillus helveticus strain LMG 22465 sequence586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ ACTCTGATTTCACCTGGTCTCATACCAGTGTA 61 29 100.0 32 ............................. TGCAGGACATGCTGCAGCTAACACAACTGTAA 122 29 96.6 32 ............................T AAATGCTTGCATGGTAAATGGGACAAAGAATA 183 29 96.6 32 ............................T AAATGCTTGCATGGTAAATGGGACAAAGAATA 244 29 100.0 32 ............................. TTGCTCAACTAGAAGAAATCTATAGCAGTTTA 305 29 100.0 32 ............................. CATATTAGCTAATTTTTCGGGTTCATTGACTA 366 29 96.6 32 ............................T CTACTGATCCGACTGGTTTCGCCAATTTGGTT 427 29 96.6 32 ............................T CACTGATATAGACATCGCACGCATGGCCCATT 488 29 100.0 32 ............................. TATTCAAGACAATTCAATTGATCTTATTTTGG 549 29 100.0 32 ............................. TTGCTCAACTAGAAGAAATCTATAGCAGTTTA 610 29 100.0 32 ............................. TAAAGCAAGTACTAAGTCTGCGGGCAAGCGGT 671 29 100.0 32 ............................. AAGCTCATAATGTTTTCTAAATTCAAAATACT 732 29 96.6 32 ............................T TTGATTGCTTCATCGAAGTATTGTTTTTGCAA 793 29 96.6 32 ............................T CAGCCGGACTTGAAGCAGCGCGTAATTGATCA 854 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.0 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : | # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCATACAAATTCAACATCAACATTTTTTACTTCCGGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGCAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATGATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGGGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //