Array 1 259587-258298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONB01000090.1 Escherichia coli strain SC357 NODE_4_length_412343_cov_157.896_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 259586 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 259526 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 259466 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 259406 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 259346 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 259285 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 259225 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 259165 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 259105 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 259045 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 258985 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 258925 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 258865 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 258805 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 258745 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 258685 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 258625 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 258565 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 258505 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 258445 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 258385 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 258325 27 92.9 0 .......................C-... | T [258306] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 269213-268643 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONB01000090.1 Escherichia coli strain SC357 NODE_4_length_412343_cov_157.896_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269212 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 269152 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 269092 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 269032 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 268972 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 268912 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 268852 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 268792 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 268732 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 268672 28 85.7 0 ....................T...C.CT | C,A [268646,268649] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //