Array 1 14351-14650 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804575.1 Neisseria sp. HMSC061E12 Scaffold181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14351 36 100.0 30 .................................... AAACGGATAAAAGGGGGGATATTTTTTTTG 14417 36 100.0 30 .................................... GGCTACCTGAAAAAATATGCGACAGCAGCG 14483 36 100.0 30 .................................... AAACTCTGAATGCGTTGGAGTAAAAATGGC 14549 36 100.0 30 .................................... ATCTACGGCAAACACTGTACCTAAGTACAC 14615 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGAAAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTATTTGAATAGCCTCTTTCTCATTTCGCAGTGCTACAATGTCTTCCAGCAAGATACGTAGCCAGTCCGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCTCCGCGTTTGATGATCAGCTTATAAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACGGTACAGCCAAACATACAAGCGCGGCTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGTCGGTTTGAGCTTCAATTTATGGGACGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGACTACAGCATTGCCACCACCTTGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGGGAATGTCAGCGTGATTGTGTTGCCTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGGAATATATTGCCAAGATAGACACGACAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAGAAGATTGCAAGTAAGGCGATTACTGCTGTTGTAGCTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 14744-15439 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804575.1 Neisseria sp. HMSC061E12 Scaffold181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14744 36 88.9 30 NNNN................................ ACGGTACAGCCAAACATACAAGCGCGGCTT 14810 36 100.0 30 .................................... TGTCGGTTTGAGCTTCAATTTATGGGACGT 14876 36 100.0 30 .................................... TCAATGACTACAGCATTGCCACCACCTTGC 14942 36 100.0 30 .................................... CGGGAATGTCAGCGTGATTGTGTTGCCTGA 15008 36 100.0 30 .................................... CGGAATATATTGCCAAGATAGACACGACAG 15074 36 100.0 30 .................................... CAGAAGATTGCAAGTAAGGCGATTACTGCT 15140 36 100.0 30 .................................... CTTTTTTATCGAGTTTATAAACGCTTTTAA 15206 36 100.0 30 .................................... CAATCCAATCATGATAACCAAAATCTGAAA 15272 36 100.0 30 .................................... CAGGCGCGGGCAAAAGGTTTGCAACATTAG 15338 36 100.0 30 .................................... TTCGGTAACTATCTGAAGTGTACTCATCAA 15404 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCTCCGCGTTTGATGATCAGCTTATAAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAACGGATAAAAGGGGGGATATTTTTTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGCTACCTGAAAAAATATGCGACAGCAGCGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAACTCTGAATGCGTTGGAGTAAAAATGGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCTACGGCAAACACTGTACCTAAGTACACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCTTGCTTCTGAATAACGGCATTTGGGGTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGACTACAGCATTGCCACCACCTTGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGTCTGCCTGTGGTTGTTATCGTTTGCTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCCTACTTATCTCATGGCGAACCTCACGGGTTGTAGCTCCCTTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 15857-16024 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804575.1 Neisseria sp. HMSC061E12 Scaffold181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15857 36 86.1 30 NNNNN............................... ACCCTACTTATCTCATGGCGAACCTCACGG 15923 36 100.0 30 .................................... TCAATGACTACAGCATTGCCACCACCTTGC 15989 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCGCAGTGCTACAATTTCGGTAACTATCTGAAGTGTACTCATCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCTTGCTTCTGAATAACGGCATTTGGGGTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGACTACAGCATTGCCACCACCTTGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGTCTGCCTGTGGTTGTTATCGTTTGCTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACCTCAACGGGAAATCCTTATTTTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTTAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACAATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCATTTTTGTCAGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 4 94931-94763 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804575.1 Neisseria sp. HMSC061E12 Scaffold181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94930 36 100.0 30 .................................... CGCAAATGTGATATTGCCTTTATAGACGAT 94864 36 100.0 30 .................................... GGAGGTTAAGCCGCCAAACACAAAACACCC 94798 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCTCCCTTTCTCATTTCGCAGTGCTACAATCAGGTGCGAAGGTCTTTGAATCCTGCCGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAACAGGTTTTTATTTCTAAAAAAATACAAAACAAAGGCCGTCTGAAATGCTCTTTCAGACGGCCTTTTTTATGTTTTCTATTTATCCAATACGCTGAAGGACAATTTCTAGGACGAATTTACTGCCTACATAGGCAAAAATCAGGCTGACAAATCCGATAATAGTCCAAACGGCGGCTTTTTTGCCACGCCATGCGGTCATGCTGTGTTTCAACAATAATGCGCCATAAATCAGCCACGACATAATACTGAAGATGGTTTTATGCGTAAAGGTCATCGGCTTGCCGAAAACGGTTTCTGCAAAAAACGTACCGCTGATTACGGAATAGGTCAATAAAACGAATCCTGCCCACATACCTTGGAACATGAGTTTTTCCAAACTCAATAATGGCGGCAAGA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 1-429 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1 29 87.9 34 ----............................. AGCGTCAGGCCATTAATTAACGCGCCTTTAAACT 64 33 97.0 35 T................................ CACGACATGCCGGGCATGACCGTTATCTGCAATCA 132 33 100.0 33 ................................. TTCTGGGATGAGCAGCTCTGCAATGACTTGCTT 198 33 97.0 34 T................................ GCTGTTGGTCATTCTGGTTTGCCTGTCTTGCCGC 265 33 97.0 33 C................................ CCGACGTTGCCGCCGCCCAAGGCATCAGCAAAG 331 33 100.0 33 ................................. TGTTGAGTTCGGCGGTCATTGGGTTTGGGTTTT 397 33 90.9 0 G..............................NN | ========== ====== ====== ====== ================================= =================================== ================== 7 33 95.7 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGCTGAAATCTTGGATACTATCGACGGCGTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATCGCGCAATGCCTGAACCATTTGCAGTAACCAGCCGCCTTCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 591-754 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 591 33 97.0 32 A................................ CGCCAATCTTCGCCGAGCTTCCCGTACTTCTT 656 33 100.0 33 ................................. ATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCG 722 33 93.9 0 C...............................N | ========== ====== ====== ====== ================================= ================================= ================== 3 33 97.0 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACCACGACATGCCGGGCATGACCGTTATCTGCAATCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCTGGGATGAGCAGCTCTGCAATGACTTGCTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGTCATTCTGGTTTGCCTGTCTTGCCGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGACGTTGCCGCCGCCCAAGGCATCAGCAAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGAGTTCGGCGGTCATTGGGTTTGGGTTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGCTGAAATCTTGGATACTATCGACGGCGTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATCGCGCAATGCCTGAACCATTTGCAGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAATTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGTCCGGTAAATGCCTAATTCGTGTTGCGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 916-1216 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 916 35 94.3 31 .................................TG CTCCGTTTAGTTTGGTAGGCCGTCTGAAATT 982 35 91.4 32 ................................ATT TTTATAAAACGGGAGGGCGCGTGAGATTACCC 1049 35 97.1 32 ..................................A CGTTATTGAGCCTAGTAAAGACAAGCTTGGAG 1116 35 100.0 31 ................................... TGTCCGGTAAATGCCTAATTCGTGTTGCGTT 1182 35 88.6 0 ...............................NNNN | ========== ====== ====== ====== =================================== ================================ ================== 5 35 94.3 32 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGC # Left flank : CTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGCTGAAATCTTGGATACTATCGACGGCGTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATCGCGCAATGCCTGAACCATTTGCAGTAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCGCCATCGTAGTACACCGTCAAGGTGTTGCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCTTCATTGCCGGATTGATGGCGAGGATGAGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1311-1606 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1311 33 93.9 33 NN............................... CCCGCCATCGTAGTACACCGTCAAGGTGTTGCT 1377 33 97.0 33 G................................ GTCTTCATTGCCGGATTGATGGCGAGGATGAGG 1443 33 97.0 32 A................................ TTCGGGCGTGTTGATTTGGATGGCTTTATTGG 1508 33 97.0 33 T................................ CCTCCGCCCTGACCGCCGACATCACGCACACAA 1574 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 5 33 97.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATCGCGCAATGCCTGAACCATTTGCAGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAATTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGTCCGGTAAATGCCTAATTCGTGTTGCGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGATAATGGTTCAGGCACCGTTATTAGTGCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAGACATCTCCGAATTAACGTTGGTGTCTGTTTTCCAGCCGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 1832-2261 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1832 33 100.0 32 ................................. CGAGTATGGCAACAGTATTATCCGGATGGTTT 1897 33 100.0 33 ................................. GGTCGGTAGGACATTATCAGTACAAATGGCTGA 1963 33 100.0 34 ................................. AATCGATAATGGTTCAGGCACCGTTATTAGTGCG 2030 33 100.0 34 ................................. TAAGACATCTCCGAATTAACGTTGGTGTCTGTTT 2097 33 97.0 32 T................................ AGCCTGTTTTGAATAAAAAAGACAATAATCCG 2162 33 100.0 34 ................................. CTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTC 2229 33 93.9 0 G...............................N | ========== ====== ====== ====== ================================= ================================== ================== 7 33 98.7 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTGTTGAAACCCCGCCATCGTAGTACACCGTCAAGGTGTTGCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCTTCATTGCCGGATTGATGGCGAGGATGAGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAATCGGCGGCGTGCCGGTCACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCAAAACAAACCCAAGAGCCGCCGGAAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2358-2652 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804579.1 Neisseria sp. HMSC061E12 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2358 33 90.9 33 NNN.............................. CACTCTGGCAAGTCGCCCACATCCTGCCCCACG 2424 33 100.0 34 ................................. CAGCAAATCGGCGGCGTGCCGGTCACTCTTTATC 2491 33 97.0 33 G................................ TACGCAAAACAAACCCAAGAGCCGCCGGAAATA 2557 33 97.0 33 C................................ TTTAAAATCCTCAGATACATTTGTGAAACCGGA 2623 30 90.9 0 ..............................--- | ========== ====== ====== ====== ================================= ================================== ================== 5 33 95.2 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGATAATGGTTCAGGCACCGTTATTAGTGCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAGACATCTCCGAATTAACGTTGGTGTCTGTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCTGTTTTGAATAAAAAAGACAATAATCCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804584.1 Neisseria sp. HMSC061E12 Scaffold407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1 32 97.0 33 -................................ CCTCTCAATACCCCGATTTTTGCGACATCCGCC 66 33 97.0 32 T................................ GACCACCGCTATTGGGTATTGGACAATCCCTA 131 33 100.0 34 ................................. AAAGCCGCGCTTGTCGGTCAGGCTTATGCTGATG 198 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.8 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 363-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804588.1 Neisseria sp. HMSC061E12 Scaffold449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 362 33 97.0 34 C................................ GGTCATTAACGGTCGATATGAGCGGCTTATGCCA 295 33 100.0 33 ................................. CATCAAGATAGCGTAAGCAGACGGTGGGATACC 229 33 97.0 33 G................................ TGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAG 163 33 100.0 33 ................................. TGTCATGCGCCGGTGTGAATTTAAGGGTGTTAC 97 33 97.0 32 T................................ CCGTGTGGCCGCTGGTGTCCGTTACGCCTTTA 32 32 93.9 0 C...............................- | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.5 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68635-68935 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 68635 33 93.9 33 NN............................... CGGGTGAGTTAGCTAGAAACTTTAAAGAGACGA 68701 33 100.0 34 ................................. TTGTCGTCTTCTTTGTCTTCTGCTTCAGGCTCTT 68768 33 97.0 35 T................................ AGGTTGTGCATCGTCGGCAATGCGCAGTTTGAAGA 68836 33 100.0 34 ................................. GTCGCTATCGGTCTCAACATTGATGCCGACTTCA 68903 33 93.9 0 G...............................N | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGACGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTTGTTCTCATGAAAATGTGGCAGGATTAGCGAATTAGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGAGAGTTTAGCGAGATTAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTCACGAAGATGTGACTGAAGAAATTAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGCAAACTAATCCAATCGAAGGAATGGATCAGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGCTTTTTTTGAGTTGGACTGCCAAGAGGGCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTCGATACCAGGGAAAATCTCATAAACTATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 69098-69262 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 69098 33 97.0 33 A................................ TCGCAAACTAATCCAATCGAAGGAATGGATCAG 69164 33 100.0 33 ................................. GGGCTTTTTTTGAGTTGGACTGCCAAGAGGGCG 69230 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 99.0 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGGTGAGTTAGCTAGAAACTTTAAAGAGACGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTCGTCTTCTTTGTCTTCTGCTTCAGGCTCTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTTGTGCATCGTCGGCAATGCGCAGTTTGAAGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCGCTATCGGTCTCAACATTGATGCCGACTTCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTCACGAAGATGTGACTGAAGAAATTAATA # Right flank : CTGTTCGATACCAGGGAAAATCTCATAAACTATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAATGAAGCAGCCATCGCCATTGGTGCGTCCCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAATCTGAGGTTGATAAGGATAAGTCTCTTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGCAAACCGTCCTGACCCGCTTATATTATTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 69425-69721 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 69425 33 93.9 33 NN............................... ATAATGAAGCAGCCATCGCCATTGGTGCGTCCC 69491 33 97.0 33 A................................ AGAATCTGAGGTTGATAAGGATAAGTCTCTTGG 69557 33 100.0 33 ................................. CGGCAAACCGTCCTGACCCGCTTATATTATTTG 69623 33 100.0 33 ................................. CTGACTTGGCAATCGAGTAATGGGCGATCGGGT 69689 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================= ================== 5 33 97.6 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTCACGAAGATGTGACTGAAGAAATTAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGCAAACTAATCCAATCGAAGGAATGGATCAGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGCTTTTTTTGAGTTGGACTGCCAAGAGGGCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTCGATACCAGGGAAAATCTCATAAACTATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTACCGCGCATTTGAAGCCGTCATGCGCGAATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 69885-70116 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 69885 33 93.9 33 NN............................... TGTACCGCGCATTTGAAGCCGTCATGCGCGAAT 69951 33 100.0 33 ................................. GGCACTGGTGGGCAGGTGTCAGCGGCTTGGATG 70017 33 100.0 34 ................................. TCGATGACTTCGAGGTCGCCATCACTAAAACCTA 70084 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.7 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAATGAAGCAGCCATCGCCATTGGTGCGTCCCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAATCTGAGGTTGATAAGGATAAGTCTCTTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGGCAAACCGTCCTGACCCGCTTATATTATTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCATCGCCGACGCGCCGACAGCGGTCGCTTTTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTCATATCAAATGACGGATAATTCGTTACAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTACCAAGCTTTTTAATCTCGGCGCGTGATTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 70278-70509 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 70278 33 93.9 34 NN............................... TCATCGCCGACGCGCCGACAGCGGTCGCTTTTTG 70345 33 100.0 33 ................................. AGTCATATCAAATGACGGATAATTCGTTACAAG 70411 33 97.0 33 A................................ ACTACCAAGCTTTTTAATCTCGGCGCGTGATTT 70477 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTACCGCGCATTTGAAGCCGTCATGCGCGAATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTGTGTTTGCCGTGATTTTGTCGCCGTGAATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTCAAATCTGTGACTGACACATCAGCAACGGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 70672-70902 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 70672 33 100.0 34 ................................. CGTCAAATCTGTGACTGACACATCAGCAACGGTA 70739 33 97.0 32 A................................ CATAAATAAGAGCAAGTGCCAGTGCGGCGTTG 70804 33 97.0 33 C................................ TTCACAAAACTCAACCCCTCGCGCTCCAACTTG 70870 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCATCGCCGACGCGCCGACAGCGGTCGCTTTTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTCATATCAAATGACGGATAATTCGTTACAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTACCAAGCTTTTTAATCTCGGCGCGTGATTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTGTGTTTGCCGTGATTTTGTCGCCGTGAATA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTGTGAACAACGCTGTTAAATCGCCGTTCACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 71001-71233 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 71001 33 93.9 34 NN............................... TATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCG 71068 33 97.0 34 A................................ TTGTTTCAGACGCAGTTGTGACCAGTCTTTACCG 71135 33 100.0 33 ................................. AGCTGTGAACAACGCTGTTAAATCGCCGTTCAC 71201 33 93.9 0 T...............................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTGTGTTTGCCGTGATTTTGTCGCCGTGAATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTCAAATCTGTGACTGACACATCAGCAACGGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGTTCTTGCCTCAAGCTCAAAAGCAGAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 71332-71628 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 71332 33 97.0 33 N................................ GAGGTTGATGCGCGCGCCGTAGATTTCGGGGTC 71398 33 97.0 33 G................................ TTTTGAGGACTACCAAGACGTTTACAGTCTTTT 71464 33 100.0 33 ................................. AACGTTCTTGCCTCAAGCTCAAAAGCAGAAGAC 71530 33 97.0 33 G................................ TCAAAATTGTATCTTTCCCCATTTTCTCAACCT 71596 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 5 33 98.2 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAACTTCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTGTGAACAACGCTGTTAAATCGCCGTTCACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 72123-72487 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 72123 33 93.9 35 NN............................... TAAATAATCATTGTTTTTACTAAGTATTTTTTTGG 72191 33 100.0 34 ................................. TGTCGTCGTTTGGAAGAAACATTGGCCGGCATGA 72258 33 100.0 33 ................................. CATGGCGATGTTCAAGCGTGATTATGATACTTC 72324 33 100.0 33 ................................. TGCTCCACGGTACACCCAACCAGCTGACCTAAA 72390 33 100.0 32 ................................. AAGGTATTGCGCCAGTACCTGACGGACGAGGA 72455 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.5 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 10 72715-72878 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 72715 33 100.0 33 ................................. TCGTATGCCCTACCCGTAGCGTTCGGTGGATGG 72781 33 100.0 32 ................................. CAGCCGTTGTCGCATCGGGAATATGCCGGTAA 72846 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACTGTCGTCGTTTGGAAGAAACATTGGCCGGCATGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGGCGATGTTCAAGCGTGATTATGATACTTCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTCCACGGTACACCCAACCAGCTGACCTAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGGTATTGCGCCAGTACCTGACGGACGAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTTCTTGGTCATTGCCAAATCTTCTATTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGGCATCGGTTGAGAGCATGTTGTAGGCAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCGTATTATCATCAAACCCCTTAAACAATTAGGAGCCAGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 73039-73404 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 73039 33 100.0 33 ................................. GCTGTTGGGTTTAGAACTTTGTAAAGACTTGAG 73105 33 100.0 33 ................................. ACTTTTCTTGGTCATTGCCAAATCTTCTATTTT 73171 33 97.0 33 T................................ TCGGCATCGGTTGAGAGCATGTTGTAGGCAGGC 73237 33 97.0 34 A................................ TTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTA 73304 33 97.0 35 G................................ AGCGTATTATCATCAAACCCCTTAAACAATTAGGA 73372 33 87.9 0 G.............................NNN | ========== ====== ====== ====== ================================= =================================== ================== 6 33 96.5 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGCTCAAATTTTGCCGCCAACGCCTGCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATGTCGACCCTACAACATATCTTATTGTAAGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCGTTTGTTGTTGGTTGATGAGTGAATAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCAAGAGGACGGTACTGTTTCCGAAGAGTGGCCAGCCGCCTTCGGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 73497-73727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 73497 33 84.8 33 NNNNN............................ TTTTGCTCAAATTTTGCCGCCAACGCCTGCGCC 73563 33 100.0 33 ................................. TAATGTCGACCCTACAACATATCTTATTGTAAG 73629 33 97.0 33 T................................ CTTCGTTTGTTGTTGGTTGATGAGTGAATAATA 73695 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================= ================== 4 33 93.2 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTTCTTGGTCATTGCCAAATCTTCTATTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGGCATCGGTTGAGAGCATGTTGTAGGCAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCGTATTATCATCAAACCCCTTAAACAATTAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCAAGAGGACGGTACTGTTTCCGAAGAGTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTTATCAAACACTACAGTTTCAGTCTCTTCCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTCCCATTCGGCGATACGCGCTTTCAGAAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 73822-74053 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 73822 33 90.9 32 NNN.............................. CCTCAAGAGGACGGTACTGTTTCCGAAGAGTG 73887 33 97.0 34 G................................ CACTTATCAAACACTACAGTTTCAGTCTCTTCCT 73954 33 100.0 34 ................................. ACTTCCCATTCGGCGATACGCGCTTTCAGAAATT 74021 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 94.7 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAACAGCGTATTATCATCAAACCCCTTAAACAATTAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGCTCAAATTTTGCCGCCAACGCCTGCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATGTCGACCCTACAACATATCTTATTGTAAGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCGTTTGTTGTTGGTTGATGAGTGAATAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 74546-74846 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 74546 34 100.0 32 .................................. ATAGTTGGTGTGTCAAATCGAATCATATTTGA 74612 34 94.1 33 T................................C TTCTAAGACTGTGGCGTTTACGGAAAAATCGAG 74679 34 97.1 32 C................................. TTTTTAATCCTTTAGTTTGGTTGGTATTTTAA 74745 34 97.1 34 T................................. ATGACTTCTTCTTCATTCGTTCTGATAAAACAAA 74813 34 94.1 0 ................................NN | ========== ====== ====== ====== ================================== ================================== ================== 5 34 96.5 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : GTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATATCGTATTTGGCGCGTCGCCACTTCACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCCTTATAAAGCCAAAAAGACCGAAACAGCAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGAATCCGATCAGGATTGAACCTAAACCAATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATACGCCGTCCCTGCGAACTGGGTAGGACGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCATCTGCATTGATAATACAGCTAGTAATTTATGCCAGCCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 15 74943-75506 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804591.1 Neisseria sp. HMSC061E12 Scaffold496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 74943 33 93.9 32 NN............................... AAAATATCGTATTTGGCGCGTCGCCACTTCAC 75008 33 100.0 33 ................................. TACCGTTATCGATTGCGCCCATTCCGCGCTGAA 75074 33 97.0 33 A................................ AATCCTTATAAAGCCAAAAAGACCGAAACAGCA 75140 33 97.0 32 .............A................... ATGAATCCGATCAGGATTGAACCTAAACCAAT 75205 33 93.9 34 A............A................... AAATACGCCGTCCCTGCGAACTGGGTAGGACGCA 75272 33 93.9 33 C............A................... CCATCTGCATTGATAATACAGCTAGTAATTTAT 75338 33 100.0 34 ................................. CCTGCGTTGATGATACTCAGGAAAGACATTGTCG C [75352] 75406 33 97.0 35 T................................ ATATATTTCCTTTCGGAGAGAAAACATGTCAGATG 75474 33 87.9 0 A.......T.......TA............... | ========== ====== ====== ====== ================================= =================================== ================== 9 33 95.6 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCTAAGACTGTGGCGTTTACGGAAAAATCGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTAATCCTTTAGTTTGGTTGGTATTTTAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGACTTCTTCTTCATTCGTTCTGATAAAACAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCGGATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGCATGATATCAGTTTGAATTTTTTTAGAATTTCAATATGAAACCCCTAATTTACTATGCTCATTTTGCCCAAGATGAACTCGGCAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGGGAAATGGCGGCGGAGTTTGCGCGAGTATTTGGGGCACAGGAAATTGCCTGCCAGATGGGAAAGTTGCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGTATGGCGATCCTTCAGGTGATCATG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //