Array 1 4677842-4680269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089067.1 Pseudomonas aeruginosa strain UNC_PaerCF19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4677842 28 100.0 32 ............................ AGGGAGACTCCCCCACCAAGCCGCGTCCAGGA 4677902 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 4677962 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 4678022 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 4678082 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 4678142 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 4678202 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 4678262 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 4678322 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 4678382 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 4678442 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 4678502 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 4678562 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 4678622 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 4678682 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 4678742 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 4678802 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 4678862 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 4678922 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 4678982 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 4679042 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 4679102 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 4679162 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 4679222 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 4679282 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 4679342 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 4679402 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 4679462 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 4679522 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 4679582 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 4679642 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 4679702 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 4679762 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 4679822 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 4679882 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 4679942 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 4680002 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 4680062 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 4680122 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 4680182 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 4680242 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4689542-4688794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP089067.1 Pseudomonas aeruginosa strain UNC_PaerCF19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4689541 28 100.0 32 ............................ TGCGCGAAAAGAAGTTGGAATTCCCTGTCCTG 4689481 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 4689421 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 4689361 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 4689301 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 4689241 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 4689181 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 4689121 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 4689061 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 4689001 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 4688941 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 4688881 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4688821 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //