Array 1 43722-45407 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDH01000004.1 Neisseria meningitidis strain M40094 M40094_S14_cleaned_ctg_10512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43722 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 43788 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 43854 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 43920 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 43986 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 44052 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 44118 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 44184 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 44250 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 44316 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 44382 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 44448 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 44514 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 44580 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 44646 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 44712 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 44778 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 44844 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 44910 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 44976 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 45042 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 45108 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 45174 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 45240 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 45306 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 45372 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 20875-21116 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDH01000037.1 Neisseria meningitidis strain M40094 M40094_S14_cleaned_ctg_10578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 20875 26 100.0 50 .......................... CGGCTTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 20951 26 100.0 42 .......................... CAGACCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 21019 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 21091 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== ================================================== ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : CTAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //