Array 1 603837-602673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPT010000003.1 Dickeya dianthicola strain DDI_16PA07 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 603836 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 603769 32 100.0 35 ................................ TTCATACCGGTGGTGAATGCCACGTTCGATGATAC 603702 32 100.0 39 ................................ TTGTATTGGTCGGAGTACCCCGCNATAGTTTTCTCAAGT 603631 32 100.0 35 ................................ TNATCGTGAGATGGGATTGACGTGTATTTTGCATC 603564 32 100.0 35 ................................ CTTCTTTTAGTGGGTAATGTATAGTTATCTCAAGC 603497 32 100.0 35 ................................ CTCTGTTCTGTGCAGTTTTTTTCCTGTTNTTAGTT 603430 32 100.0 33 ................................ CAGCCAACTGGCGTCAGGTCAATCGCGTTCTGC 603365 32 100.0 34 ................................ ACGCTCACCAGTTTGTATCCGTCNTTTTTTTATC 603299 32 100.0 34 ................................ CACGGTAGTGCAGTGGGTAACAAGGTTAAGAGTG 603233 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCATCCTTTAGTGGGTA 603166 32 100.0 32 ................................ TTGCATGGCCTACCCCGCGTACAATTANNATG 603102 32 100.0 34 ................................ CTGCCNCATCTGTTTTTATTCGTCGTGGTTTTTC 603036 32 100.0 34 ................................ ATCATTACCCTGATGGCAACGTCGAATGCCAGCA 602970 32 100.0 36 ................................ AACGCGAAGCTTGACAATCTCAGCACGCTCTTTCTC 602902 32 100.0 35 ................................ TCTTTTTTTGTTTCTTTTTGTTTGTGCCTGTTTTT 602835 32 100.0 34 ................................ TCATTTTCTGCCTCGAATCGAATGTCGCTGTTTC 602769 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 602703 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ======================================= ================== 18 32 99.0 35 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 453497-452927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPT010000008.1 Dickeya dianthicola strain DDI_16PA07 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 453496 28 100.0 33 ............................ TTGCCAGTTTCTGTTCCCATTGCGAATGGTGAA 453435 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 453375 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 453315 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 453255 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 453195 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 453135 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 453075 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 453015 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 452955 27 89.3 0 .......................-..CG | GG [452932] ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 462212-463686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHEPT010000008.1 Dickeya dianthicola strain DDI_16PA07 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 462212 28 100.0 32 ............................ ATTAACTTTATGAGGTGAAGCATGGGCTACGC 462272 28 100.0 35 ............................ AGTATTATACACCAAACCNCCGAACAAAATAATAA 462335 28 100.0 32 ............................ GAACGAACGAAGTGAGAGAGGACTGAGAGAGC 462395 28 100.0 32 ............................ TCATTGAGTAAGCCTATCAAGACACTAACCAG 462455 28 100.0 32 ............................ TCATTGAGTAAGCCTATCAAGACACTAACCAG 462515 28 100.0 32 ............................ GATCGGGAACATCTGCGTGCGGATAACGTCAT 462575 28 100.0 32 ............................ AGTCTGAGAGTTTTGCAAAAGAATCACTAGGA 462635 28 100.0 32 ............................ TGGTCGATGGTCGAAAACACCGGTTGCAGGTC 462695 28 100.0 32 ............................ CACATCACACCCCCATGTTTTCTGCTGCATTG 462755 28 100.0 32 ............................ TGCGTGTTAACTACTCCGTCGGCACTGGCCCG 462815 28 100.0 32 ............................ TGCGTGTTAACTACTCCGTCGGCACTGGCCCG 462875 28 100.0 32 ............................ GTACATGGCATTTTCCCGAAAGGGCAGAAGGC 462935 28 100.0 32 ............................ ACATTCAGTTGCACCGGCATAGCAGAAGGAAA 462995 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGT 463055 28 100.0 32 ............................ TTGCACGCGCCGGCATCCAGAATTTCGTTCAG 463115 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 463175 28 100.0 35 ............................ CACTGGGACAAAGCGGTTGCCNCTGCCTATCTGGT 463238 28 100.0 32 ............................ AGTCAGGACGGGTTTAAGCCTGCCTATCTGGT 463298 28 100.0 32 ............................ TTGCACGCGCCGGCATCCAGAATTTCGTTCAG 463358 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGAAAACAAAAA 463418 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 463478 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 463538 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 463598 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 463658 27 85.7 0 ....................G..-..CG | AG [463676] ========== ====== ====== ====== ============================ =================================== ================== 25 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //