Array 1 1113127-1114039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1113127 37 100.0 34 ..................................... CCCCTGCCCCTGCTGCTATCGGAACAAATTACAA 1113198 37 100.0 32 ..................................... TCATATTCTCTCTGTTGATCTAGGACTGACAT 1113267 37 100.0 36 ..................................... ACACGAGCCAGAGGCTTTGGGATGATTTCGGTGTAG 1113340 37 100.0 39 ..................................... AGCGTCGATCGGCTCCTTGGCATCTCTCCCAAACTTCGC 1113416 37 100.0 39 ..................................... ATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGC 1113492 37 100.0 34 ..................................... AATTTTTCCGGTTAACCAATCTCTACCCGCTTGA 1113563 37 100.0 33 ..................................... TAGCTCCCTTCTGCTATTGATTTCCCCTTTACC 1113633 37 100.0 41 ..................................... CTAGTTCTAGCTGATAAAGGGATTTACCAGAACCAAATTGA 1113711 37 100.0 32 ..................................... AGGACAAACAACAACCATGTGAAGGTGCAAAG 1113780 37 100.0 35 ..................................... GTAGAGCTAATTTTATGGAGCAGCAAACATTAGCT 1113852 37 100.0 37 ..................................... TTAGAAGGCATGACTTATAATCCAGTTTTGGCGGGAA 1113926 37 100.0 40 ..................................... TTCACAGCTACGCTCCTCTGCGTAGCTGCGGCACTGATAA 1114003 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCTTCTTTTTCGATCCCAATTTTGATGTAGAAGTTAAGGCCATTGAATTAGATAATATAGTGGCGAATGACAATATAAGCGATCGCTGGGATAATGCTAACATCCATGATTTTCGCGGAACTTATGGTGATTATGTGTTGAATAAGGTGTCTAAAGTTTTTCCCGAATTGCGGCGAACAGTCTTATAAGGTTTTAAGCCATTTATTTCTTGCTGAGTCGCCTTTTGGTTAGGTTCCTGTATATCAAATGCGCGAAAGGGTAGGTGTACAAATTTAACAGCCTCAAAAAAGTGCTTCTATCCCAACACCAGCAAGGCTTTCACCCTAATAATCGCCCTATTATCATCCGCGCAATCTCTGAAATGCTTACAAAAATCGGGTTTCAACCTTTAAATTTTCCGGACACTCTTTCCAAACAAATTCTCTAATGCTATGATTGCTCAAGAATCGCGCAACTGCACCTTGAAAACTAAATACAGCTTAGGTTTCAAGCTCCCGCT # Right flank : CCATTTTCATTTGTCACCAGTGACCTATAAAAGGCAAATCCCTCTCTAGTGCAGTGTAGAAAGGGATTTATGAGGTATTAATACCCTTGTTTTTTGATTACTAGTTTAAATTATTTGCTTTTTCAACAGCTTCCTTTAACTCTTCAAAAGTAATACTACCGTCTTTGTCTGAATCATAATTTACTAATAATTCCTGGGGACTACTGGTATTTGTTTCTGATGAGATGATTGCACTTAAGCCAGGACTTAAAAAAAGATCGTTAATGGAGACTTTGCCGTCTCGATCACTATCTAAGGTATTAAAAAGAGATTGAAGCTCTTGCTCGGTTGTCATAAGTTTCTATCTGAATTACTTTTTTGATTTAACACTCTCAAAATCTTGACAAAGACGCAAGGACAGTGAGGACAGTCCAGTGTGTGAATGTAGTAAATTGAACACTTAATAGCGTATCTAAGGTTAGCGTTTCGAACGCGATACTTCCAAAATCTCCCTCTATTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 1978344-1978675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1978344 37 97.3 35 ................A.................... CCAACCCAAGGCGACCCTTGCACAAAATACAAAGT 1978416 37 100.0 39 ..................................... TTTGACTATTGTTGTAGCGTTTTCTGCCCCTATTCTTAT 1978492 37 100.0 36 ..................................... ATCTCCTGCCTATGACGGAGCAGGTGATGGGGGAAA 1978565 36 81.1 37 ............T..C.....A.A..C.-T....... TAGAAATAAGTTCAAAATCGAACCTAAATCAAAATGA T [1978585] 1978639 36 81.1 0 ............T..C.....A.A..C.-T....... | T [1978659] ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 91.9 37 GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Left flank : CTTTAATTAAGTCCTGATGCTTAGTCATTGATTTATGGGCAAAACTAAATTCCTCGCTCATTGCAACCACATCATCATTTAACTCGCTCATAATTTCCACCATGAATAATAAAACAGGCTAACTGCCTGCCCTTGCATAAAATTCCCGTAAACAACAAAAAAGCAATCGCCATCGCTCCAGAACTCAAGCGTGATAATTGCCTCAGCTGCCAGTTTCTGACTCCAGCAAACTCAACACTTTCTCCTCCAACTGGGTCAAATAAGCCCGATTCAGCTTTCCCAGCATCTCCAAAAACTTCTGCACCGACTCCTCCAGCGCACTCGAATACACCCGATTGATGCCATCGCTAATCACCTGCATCTGCTCGCACTCGGCAGACAAGTAATTGTAAGATTTAAGGTGCTGCAACCTAACGGCGTACTCACCATCCCACATTCTGACGGTGCAACCGAAATCAGAAACCATCAAACAACGAATTAAATAGGCAATCCAAATAGGA # Right flank : CCACGAGCATTAACAGATATTCCGCACTCATCAAACAACACGTTTCAGTCCCCTTGCGGGTTAATAGGCTATTGTTTTTTGGCTTTTAACAAGACTTTTACGCTCTTTAAGAGGATTATCTCGCTCATTGTGACGATACAAAACCTGATATTGATTATGAATTTTGGCTGTCACAATTGCTTTGACTAATTCTAAACGTCCGACGGGATCGCTATATAGTTGATATTGTGCTAATCGCAATTGACCATTGCGCGAATAACCAGGAAGTGCAGAACCCAGATATTTACCAAAGCTAGAAAGATAGTGAACAGGCATACCTAATTCCAAAGCATAAACTAGAGCATCACCTGTGACTTGAGGGTTGCCCATCAAGACAACTTGTTCAACAGTTTTGGCTGCAACAGTCTGTTTTGTCCAAGAACCATCTGATTGTTTAAGAGCAACATTAAAAGCTTCGTAGTTCTTGCTTAAAACAGCATCAGCCTGAGTTACGTAAAGTA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2096244-2098018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2096244 36 100.0 35 .................................... TTCGGTTGCTCCTGACTTCAATTTACGGTTGTAAG 2096315 36 100.0 37 .................................... CAGCTTCATTCAATTCAGTCTCAGCGTGTCTGACAAC 2096388 36 100.0 38 .................................... TTAGTTGCATTGCTCTCACCAGTTTCACAAGCTGAAGA 2096462 36 100.0 43 .................................... CTTTTTTTAAGGTTTCTACAAATTTGCAATTATACAACTGCTA 2096541 36 100.0 39 .................................... TTAAAGTTGTCGCTTATATTAAAAATGTGACTATTGCTT 2096616 36 100.0 33 .................................... TTTGAACTGCTCTTCGCAGGATAAATCTTCTGG 2096685 36 100.0 37 .................................... TTTGTGGCTCCAATACGTAGAGCCATGTCAAGTACAG 2096758 36 100.0 38 .................................... CAGATTGTTCAACTTCTTTTCAATAGTACACCTTAAAC 2096832 36 100.0 36 .................................... GCTTCATCGGAATATTCAAACGACACGAGTAGGAGA 2096904 36 100.0 35 .................................... CAAATACGCTACTAACCCTTCCATTTATAAAAAGG 2096975 36 100.0 31 .................................... ACAATGCCATAAGATTGTCAAAACCTCTTAC 2097042 36 100.0 36 .................................... CACTAGCTAACTTTGGCTAGCGAACACAAACTAAAC 2097114 36 100.0 35 .................................... ATAAACCAATTACTACAGCTGCGAAAGCGATTTTA 2097185 36 100.0 34 .................................... CGAATCTGAAGTTCCGTGAACAATAAAGTTTGGA 2097255 36 100.0 35 .................................... CCAACTGCAACATATTTATTGCAGACAGGATTTAA 2097326 36 100.0 34 .................................... TCTTCTACTACAAGTTGTGGTTTTACAGGTTGTG 2097396 36 100.0 36 .................................... TTTACAGTCGTCTGCTGAAGATCCTCGATGACATTC 2097468 36 100.0 37 .................................... ACCTTGTCATAGAGTTTACAGAGTTTGGCAAGATCTG 2097541 36 100.0 38 .................................... GCTAGTAGCTCTCCTTCAGAGAGAAACATAGTTATCAA 2097615 36 100.0 36 .................................... GAAGTAACTGTGATAGTAACCCCAGCTAGTGCTTTA 2097687 36 100.0 38 .................................... ATTAAAAGGTCTGCTGCCCCTGGGTGGCCATCATCCAG 2097761 36 100.0 36 .................................... TTTAATTGTTTGGTCAACTTGACCTTTTTTAGCGGT 2097833 36 100.0 37 .................................... GTCGTGTATGCCGCGAGAGGGACATTACTAAGTTTCA 2097906 36 97.2 41 ...............................G.... GGTGCATTACAGCGCCAGGCATTTATCCAACCCGTAATATT 2097983 36 88.9 0 ....G.........................AA..G. | ========== ====== ====== ====== ==================================== =========================================== ================== 25 36 99.4 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC # Left flank : TACTTAAATGTTAGTTGTTGTTGTGTATGATATTCCTGACGACAAAAGACGCTCAAAATTATCCAATTTTTTGGAAGGCTACGGGCGCAGAATCCAGCTTTCAGTTTTTGAATGCTTTTTGAGTTTGTCAGAGATGCGGCAACTTTACGATGATGTCAAGAAGCGGGTTAAGGCATCTGAGGATAATGTCCGGTTCTACTGGATTTCTCAGGAGGCTGTTAATAGAGTGTTAACAATTGGTGGTGAATCTCCCCAACCACCGCCAAAGTATTATGTAATCTAGGTTTGGGGAATTTTCAGAGGTTTTGTATCAGCTTCATCTACACACCTCGGTGAATGGCTGAAACCATACCTTTTTCGTTGAGGTGTGTCGATTGCTTACAGGGAGCGGGTTTGAGGTATGTCATACACTAAGTTTTTCGGTAGGATGTACAATATTTTTAGAGGTGTGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CCCAAAAAAAGCCCTCTCAATGGAGGGCTTTTATCTGCTTAATAACATCGCTATAACTTATCTAAGCTGCATCAAACTTTCTATACTTAGCGAGTTTGTATTGAATATCATCCAAATAAATAACTTCATCGGCTATTTTAGAAAGTTGCTCACTTAACATACTCTTCTTAGCAACAACAGTAACTTTCACGCCGCGACATTGAATCTCTTCAACAACTGGAATAAAATCTCCATCTCCACTCACAAGAATCACATCATCTCCTTTTTTAACTTCCCGAATCATATCAACAGCAATTTTCACATCATCACCAACGGTTTTAAAAGTTTTACTATCAGGCCGCGCTGAGATAGGAAGCCCGATAACTTCATAACGCTGATATTTTAAATAATCAATAAATCGCCTTTGTCCATCATTCATAGGCGAATGAATACCAGTGTAATATTTAAAATTAGTCCGGCTAGTATCTTGAGAAAGTTCTATGCGTAAAGCATCATAATCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 2110528-2112181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2110528 36 100.0 37 .................................... GTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAG 2110601 36 100.0 41 .................................... GTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATC 2110678 36 100.0 37 .................................... TCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCT 2110751 36 100.0 33 .................................... TTGACAGTGTGAAAGTTTCTACCATCTGTACTA 2110820 36 100.0 36 .................................... AGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGA 2110892 36 100.0 41 .................................... ATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATT 2110969 36 100.0 35 .................................... GGAAGACCACTTCCTCTTGATGGAATTGTTTCTAG 2111040 36 100.0 34 .................................... GTTGATTTTAAAGCCTGGCTACACTGAACTACGA 2111110 36 100.0 37 .................................... AATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGA 2111183 36 100.0 33 .................................... ACAACGTCCAACACTTCGCTAAGAATCAGTTGC 2111252 36 100.0 41 .................................... AAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATA 2111329 36 100.0 44 .................................... TGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAA 2111409 36 100.0 38 .................................... CCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGT 2111483 36 100.0 40 .................................... CTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGC 2111559 36 100.0 37 .................................... GCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAG 2111632 36 100.0 36 .................................... GCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTT 2111704 36 100.0 40 .................................... ATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGT 2111780 36 100.0 36 .................................... GCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAA 2111852 36 100.0 41 .................................... GAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAA 2111929 36 100.0 33 .................................... AATTTGTGGCATTAAGTCTAAGCTCATCTTAAA 2111998 36 100.0 37 .................................... ATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAA 2112071 36 100.0 39 .................................... TCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAA 2112146 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ============================================ ================== 23 36 99.9 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : CAATAGAAGATGCGATCGCTGATTTTACTGGCATGACTGCCCAAGGTAGTGTAGGAATGGTACTTGCTTCGTTGTCTGTACAAGGTCTGTTACAATACACGCCAGCTGAATTTAAAGATGGACAACCTACTGGTTATTCTCTCAACTCGATTGAAATTACTCTCAAGGAGCAGTTTCGCAGAGGAAAAAACTAAGTAATATTTTTATCTATGTCAATGTTTATACTTTATGCTTAAGTTTGCAGGCGATCGTTATTTTCAGTAAAAGTATTGTTATATCTAGGTTTAAGGCAATTTATAAGAGTTTTGTATCAGCTTCATCTACACACCTCGGCGAATCGCCCAAACCATACCTTTTTCGTTGAGGTGTGTCGATTGCTTACAGAGAGAGGGTTTGAGCTATGTGGTTTGGCCAATTTTTACTGAGGATGTACAATATTTTTAGAGGTGTGTCGATTTTGGCGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CCATTAAAAACCTCCTGTATCCGTAACTGGTAACAGGAGGTAATTTTTAGTGACAATAAAATATTTAACAAAAAAACGATTAGTAATTATCTCCTTATTTAAGGATTTTTATTAACTTCTTCCTCTTTTCCATAACGATATAAGATTAATTTTTCTTGAGAAGAACGACAGCTAACCCGCACACCTTGAGTGACACGAAAGTGGTCAATATCTCCCATATTAGTATACTTGTCATACTGCAATCCTCCATGTTTTTTGAGAATAGTAGTATCACCACCAGAATCTTCTAACAGATAAGAAACTTTAGCTAAAGTCTCTTGTAACTTTACCCTTTGCTGCTTATCTTTTACCTTTTTGTAGTCAGCTTCAAAGGAATCTTGATACTCTAAATTAAAAAATGAAAGTAAATCTTCTGAGAGCAAATCTTCTTTACACTGATTCCAGATTAACTGCCCCCAAGTCGAAAGTGTCATTTGCTCGTCAATTTCTGCAAGCATAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 2676660-2676258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2676659 37 100.0 32 ..................................... TGGAAGAATCATAACACTCCTGAATGGAAGAG 2676590 37 100.0 36 ..................................... TGCCATTGTCGCTATGACTTAAAGGCAATGCCCCAA 2676517 37 100.0 40 ..................................... TTTACAAATGGAAGAGAATCAGCGCGAGGAAATTGACCCA 2676440 37 97.3 38 ...............T..................... TTAACATACTGCCACCAGTCTTTACCTTGCCCATCACG 2676365 37 81.1 35 .......T......T.T....T...A....C.....A AAGTCATTCACAATCGGATTGGGAAGTGAAGACCG 2676293 36 78.4 0 A........A....T.G-.A.....A......A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 92.8 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCAGCTTACTATTCCCGCAAAATAAACTGATTGACAAAACACCGAACCTTGATAATAGAATAAGAAAATTAAACAGCGCCGCAGTTCATGCTTGTTACAAGCCTCTGTGCTGTGTAAATTTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTATCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGGAAAGCGGGGGCGATTTCCCTGGGACTCCTGGCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTAACCAGCGATTTTGGGAGACGTGACAAAAATGCCTTCAGAACTATTGGTAAGTCAAGGGTTTGAAGCGCAGA # Right flank : ATTAAAAGATTTATATCTTATTTTTCAGATTAGCTACAACAGTTTTGTTAAAAAGGGTGGGTTGAAAGGACTCTTAATCTATTGGTCGTAAATGTTTTGGACAAAAAATATTTTCTAACAAGGTGAGATTAAACGCACAGTACGTTATGGATTCTTCCTGCAATCGCCAGCTGTGGGTATCTTGCAAAAGCATTCTAGGCGGTTTCTTTTAAAGTATCGTAATCAATCACCTAAAAGTGAGATATACATGAAATAATGTTATAGGAAAGTTACATCCTAGTTCTCTAAAGTGCCATTAATTTCTCAAAGAGGATATTAATCTCTTAACAATGACATTAATTAGTGAAAAGTGACAATAATCTGTTAACAGTGACAAATAATTAGTGAATGTACAAGGATAGCTGGGATAGTGGGTGACGAGGGATTTGAACCCGCAACCAATAGATTAAGAGTCTACTGCTCTACCGTTGAGCTAGTCACCCACACGAATAACTATCATA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 6 2848718-2849046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2848718 37 100.0 33 ..................................... AACTACATTATCTTGCCCAATCCATGAATCATT 2848788 37 100.0 37 ..................................... TAGCCAAGGTTTTGTAGTTGTAATGAGGCATTGCTCG 2848862 37 100.0 37 ..................................... GTGTTACTGAATTCTATCAAGCTTTTGACAAAGCAAA 2848936 37 100.0 37 ..................................... AGCCTTTAAACGTGAAATGGTTTAGGGAAGGCAGAGA 2849010 37 97.3 0 .......................G............. | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCTCCGCTTACTATTCCCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAAAATAAGAAAATTCAACAGCGCCGCAGTTCATGCTTGTTATAAGCCTCTGTACTGTGTAAATTTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGCGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCGCTGGGACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTGATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACGGGCGGTTTTGGGAGACGTGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGGCTTTGAAGCGCAGA # Right flank : GTACACAAAGGGAAGTCAGTAGTATAGCGGTTATCAGTCTTGTGAGGTACAGTAGCAGCAGTGAGTAAACCAACCCAGCAAATTCTCTATTGTCACTTCTGCGAATGCCGTATCTAATGCCTGGAGTAAATCAGGGTATGTCCTTGCACCGATGCGACGGAGAATGTTCTTAATCTTGGACCAACAATTCTCAATCGGTGAAAAATCGGGAGAATAGGGGGGGAGATAAATGAGATGAGCGCCAGCAGCGATGAGCAAAGCTTCAAGTTCATCACTTTTATGGATTGAGCAGTTATCCATGATCACCACTGCACCAGGCCAAAGTTTGGGTACGAGCTTTTGGGCGATGAAGGCATCAAAAGTCAAAGCATCGATAGAACCTAAGCCACTCCATTGGGTGAGCAGTCCTTTCAAGCTAATTGCACCAATTACCGAGACATTTTTCCCTTTGCGGTTGGGCTTTTGAGCATAGGCCCGAAGGCCAGGCAAGGCGCGGGCAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 3154959-3153553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3154958 37 100.0 37 ..................................... TTGCCGATGTATCTGATGAAAATCCTGATAAATTCTC 3154884 37 100.0 34 ..................................... GCATAAAAAAGTAGTTCTCAATTATCTTCTTCAC 3154813 37 100.0 35 ..................................... GTATCCTTAATGCTTTTAAGCGCCAACTTTTGCGT 3154741 37 100.0 34 ..................................... ATCTAAAAATGATGATGCTGCGATTTCTTCGTAT 3154670 37 100.0 35 ..................................... CAACATTAGCTTCTGACTCTAGCCGCTTGATTTTA 3154598 37 97.3 35 ....T................................ ATGAGATGCGATCGCCTCTACAGTTTTTAATTCAT 3154526 37 100.0 36 ..................................... TGACGTAAGTATTGGTGTATATGAATCGCTTAAATT 3154453 37 100.0 34 ..................................... AAATCGAGCGCGTTGATTTTCGGCTTCCTAGAGC 3154382 37 100.0 33 ..................................... AAGAGGAAAAGTGAATGATGGCCCATGCGGGAA 3154312 37 100.0 35 ..................................... ATTCTGATGAAAGGTCTACCAATATAACGGTATTA 3154240 37 100.0 35 ..................................... ATTTTGTACACAAGTAACTAATATAAATGATAATA 3154168 37 97.3 34 ....................C................ AAACTAACAACCTCTCCATGCTCTATTTTTGAGG 3154097 37 97.3 38 ....................C................ CCACAGAAAGGGACAAAGCGTATTTCTGACCAAGAGTT 3154022 37 97.3 34 ....................C................ CTTGTCCGGGCGGCGTTTGAGTAAAATATCTCGC 3153951 37 97.3 38 ....................C................ GCAAAAAGTAGACTTGAATACCACCAAAGTACTGAATT 3153876 37 97.3 35 ....................C................ AACTTTTTACTATTTAAGGAATGAAAACAATGCAA 3153804 37 97.3 35 ....................C................ GGCAAGCACTTGGGAATGCAGCAAAACTTGCGGGA 3153732 37 97.3 34 ....................C................ CCTACCGTTGGCAGTAGCAGTAAACTCTATTTTT 3153661 37 97.3 35 ....................C................ ACAAAATCTATTCGAGAAGTATCGCTGACAAGCAC 3153589 37 91.9 0 ....................C..............CT | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.4 35 ATTGCAATTAATCAAAATCCATATTAGGGATTGAAAC # Left flank : TATTTCTTTCATCATCTCTACCTTAAATTGGCGGAAACTTTATTGTTGGTTATCAGTACAGTAGTACGACAACAAAATATTACAATTTATGAATCAGTATACCGTAATATTAGATTCGTTTGTTGTCCAAATGTTCTTTCTGTGTGGCTTTTTTCAGAGAAAAGCCGCCTATATTGATAAAGAAAAGCCACTGGAATAAACAATTTTCTGTACTGACTTCCCTTCTGGCTAAGTTCCCATATCTCAAATGCGCGGAAGGGTAGGTGTATAAATTTCACAGTCACAAAAAAGTGCTTCTATTCCAAATACAGTAAGGCTTTCAACCCATTAGTCGCCTATTCCTCATCCGCGCAATCTCTGAAATGCCTATCAAAACACGATTTCAGCCTTTAAATTTTTCTGGCACTCTTTCCAAACGAATTCTGTAATGCTATGATTGCTCTTAAATCGCGCAACTGCACCTTGAAAACTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : TTTCTATTGGCCTATTTTGCTCCTTATATCAATTAGTAAATTTTTTGAAAATGAAAACACAGATGAATATAGATAAATTATCATTGATTATCTATATTCATCTGTGATTATCTGGTTTCAATACCTGGAAATTAAACCATTAGACTTGTTGTATTCCTGGACGACCATCTTCAACCAAAAATGAAGCCCGCTTACTAATGGTGCCAAATGGAGTTGTCACATTTGACAGAACCAAATAGTCTGTCTTGTAAGTTGTGGGAGTCAGCCCACAGCGAACATACCCCCGTTGACCATTGAAGAACTTAATGTGTGGGTTTTCAGGTAAGTAAGCTTGAACATTTAAATTAGTATCTGCCCCATCTCCACCAGAGGTTATTGAAGTACAAACGAATTCACTCCCGACTGTGGTAGATCCTGGGTTATTAAAGTCAGCCTTTAAATTTATTGCCCAATTAGAATGGACATCGCCTGATAAGACTACTGGATTAGATGGTTTGCGC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCATATTAGGGATTGAAAC # Alternate repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 8 5113731-5112598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5113730 37 100.0 35 ..................................... CCAGCCAGAGTAACAATGTGGATTGTCACGAGGTG 5113658 37 100.0 38 ..................................... TAACTTCGTAACATCGCTGATAAACGGAATAGCGCAAA 5113583 37 100.0 37 ..................................... AGTAGAAAGTAACACTTCCAGAATAAGGGGGGGTATG 5113509 37 100.0 35 ..................................... TTCTCTTAGGTACAAGTGGGAAATTGACGAATCAA 5113437 37 100.0 36 ..................................... TTGCAATTGGGAAGGTTGCTGGTTTCGTTATTTAGA 5113364 37 100.0 34 ..................................... ATTGCTTTGTGACTGTGGAAATACGCTTCTACGC 5113293 37 100.0 32 ..................................... GGCTGCTAATTTGTTTCGGTAGCTATCTTGAG 5113224 37 100.0 34 ..................................... GAGGAGACTGAAGTTTTAGCTGCCTAACCCTTCT 5113153 37 100.0 35 ..................................... TCCTAGTTTGTTGGAGTGGTGTACGAGGACAACGG 5113081 37 100.0 38 ..................................... ATTTGCAGTGTGCAACCGTGGTGCATTCCAACCAAGGA 5113006 37 100.0 35 ..................................... AACAATCAACTTTGCGGTTTTGCGCTTTGTTCCAT 5112934 37 100.0 38 ..................................... TTTATTATCAATCACGCAATGTACCAACTGTGCCAAAA 5112859 37 100.0 41 ..................................... AAAAGTAACAGACAGCACGCGATTGCGCTAACCTCAGAAAG 5112781 37 100.0 35 ..................................... CTTCCCACTCGCTAACAACTACGCTTGTGTTAAAG 5112709 37 100.0 38 ..................................... TGATTAGTTAATCAAACCTAGACTTTTAAAATGATTTG 5112634 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 100.0 36 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GGCAAGATCGTTTTATGTTTTCTCTACTGTTCATAGAATTAACAGACATGATACGTAATTCTTCGCTGGAAAGGGGAACAAAAGAGGTTTTGATTAAAACAGCTTTTAGGGAGTTTGCTTGTGCAATAACAGACTTTGAAGACGTTGGCAAATAAAATCAATTATGGGCTGCTGGTATTCTGTAGGTGTAGCCCACGCCGGCATCACTCTAACTAATCGAGTAGAGTGTTTACAAGTAAGCAGCTTTCCAATCAGATTAGTTTTTTTTGCTAAATGCGCGGATGGGTAGGTGTTGGGGAAGGGGTAACTAGAAAAATGGCTGAACTGTGCTATATGCAAGAACTGGCGAGCGATGGCACTTCAAACCATCCGCGCACCTTATGGAGATTAGTTTTCAGCCATTTGCCTCTAGCCAAATCACAATTCATCGTGTTATCATTTCAGCATTCGCGCAACCGAACCTTGAAAACCAAATAGGGCAAAGCTTTCAGAAGCCAGCG # Right flank : AAACCACCCAACACAAAACAAGCCCCAGGCGAAGCCCATTCTGTATTCTGACTCCTGTTTTATTATTTTTCACTTCAAAATTTTGTCATGAAAGTAGATTCAATTAAGGTAAAAGCTAATAAGCTTTTAAAGATTGTCTCTTGTGTCTCGTTTCCAGCTAGAGGCTGAAAACGAGGTTTTAAAGGAGTTTTAGCTGAAGTTGATACCTGTGCAATTAGCGCTTGTGATGATTTCGCATGGCTTTATGAATCTTTTTCCAGCGTTCTTTCTCGGCTAGTTGCATCCTCTGGTCTTGTTTGCGTGTAAGGTAATCGAGTTCTTTTTGCAACTTTTGGTAGCTGAGAAACCTGGAATAATCAAGTTCTCCTTCAGCCAAAGCCTGCTGCACTCCACAACCGGGTTCGTTATTATGCTGACAATTGCGAAAATGGCATTTTTGCGCCAAGGTTTCTATATCTGTAAAAGTTTCTTGCAAACCTTCGTCACCTGCCCAAATTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 9 5662237-5660075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5662236 37 100.0 34 ..................................... CTTTTAGCTCAGACTCAAGCTGATGCTGCTGCCC 5662165 37 100.0 38 ..................................... GCAAAAAAGCTTTTCTGGGGATTATAATCCCTATCAAT 5662090 37 100.0 35 ..................................... CCAAAATCTCATAAATTTATTTGATAGTACAAATT 5662018 37 100.0 33 ..................................... AAGGATTCTCTAAGGGAGGATTGCAATTGGGCT 5661948 37 100.0 36 ..................................... AAAACCACATTGGAGATACTCGTGAAGACCGCTCCA 5661875 37 100.0 38 ..................................... TCTACCTAACCAAAACTTACCATGACTGACCAACAATT 5661800 37 100.0 42 ..................................... AAAAATTTACTTGTTGGAATCGATTTTAAAAGGCGATCGCAC 5661721 37 100.0 35 ..................................... TTAATCCCCCTTTTACCCAAAAGATATAAAGAAAA 5661649 37 100.0 35 ..................................... TAAAATCCAGGGGGGAAAACCGGGAGAAAAACTAG 5661577 37 100.0 35 ..................................... AAAAATCTTCATCCTCCTCTCCCCACTGCAAAGGG 5661505 37 100.0 38 ..................................... TGGATTTGGGTTTGGGTTTGGATTTGGAATCGCATAAG 5661430 37 100.0 45 ..................................... AATATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGCCTG 5661348 37 100.0 34 ..................................... GTCGCTATCCACGGGCGGCCACGGCATAGATAAA 5661277 37 100.0 35 ..................................... GAGACACAGTAGGTTCAACCGCTAGCAGTGATTGA 5661205 37 100.0 36 ..................................... ATGGAACAATTGTCTTTAGAGGAGGGTGGCCAGCTA 5661132 37 100.0 35 ..................................... TCCATCAGGATTCCCAAACCAATAAATGGGTACGA 5661060 37 100.0 36 ..................................... TCTTTTTCTTTCGATGGTGAAAAATATATCGCTCAA 5660987 37 100.0 34 ..................................... AAACTTCCCCAAAATGACCATTTGGCGCGGACAT 5660916 37 100.0 37 ..................................... TCCATCTTAAAAGGTGACAAATATACCAAAGCAAATA 5660842 37 100.0 36 ..................................... AAAAATCCCCTTTCAGCATGGGGATATTACGAGATT 5660769 37 100.0 36 ..................................... TTACAAAGAAACTACGGGAGATGCAGCAAAACACAA 5660696 37 100.0 34 ..................................... ATAAGAAATACAAATCATGCAGAGATGATAAAAC 5660625 37 100.0 41 ..................................... CTGTTGTCAATCGAGCCAAGGGTGGTAAGAGTACATTTATC 5660547 37 100.0 35 ..................................... AAATTTGACTCTTCCATTCATGAAATCAATAAGGA 5660475 37 100.0 35 ..................................... CACTTGGCATTTGTTACATAATAGGCACCTGGTTC 5660403 37 100.0 37 ..................................... AATGTTTACGGTTTGAGCAGCGTAACTTGAGATTCGA 5660329 37 100.0 37 ..................................... TTGCATCTTATCAAATTTATGCTGAATCACAATTTAA 5660255 37 100.0 34 ..................................... GCGAATCTGGACAGGGACTACAGAGTTTATGATT 5660184 37 100.0 33 ..................................... GGAACGCCTTCAGACATCTGGAACACGCCAAAC 5660114 37 94.6 0 ............................T.......T | GGG [5660081] ========== ====== ====== ====== ===================================== ============================================= ================== 30 37 99.8 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GAATTGCACTCTTAAGTATCGCTATCCAGGAAGGATTAACACCAGAAGAAACCTTAGCAAGAGCTAAGAATCTGGGTTTTGGATTCTTTGAACATGCTGGTGTGAGTCCCCGACTAAAGCAATTATTTGTGGACTACGTTAGCAAACACGCCAGATTAGCTGTGCCTACTTGCTAAAACAGATGTACGAAATAATAGGATATGGTCTGTTTATTTACGCCGCACTGTACTAGGTTTCTGCATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAACCACAAAAAAGTGCTTCTATTTCAAGTACAGTAAGGCTTTCATCCCATTAGTCGCCTAATCCTCATCCGCGCAATCTCTGAAATACTTATCAAAAAACGATTTCAGCCTTTAAATTTTCCTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCTCAAGAATCGCGCAACTGCACCTTGAAAACTAAATACAGATTGGGTTTCAGGCTCCCGCT # Right flank : AGTTGCAACGGCTCCCTACCCCCTGCCCCCTGCTTCCTTTAATTTAGCTCAACGATATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCGGCTTCGATACACTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCTGGTGTATTTTCTAACAAGTTAATCCCCTCTCTGCCGTTTTCAGCATATAGTACTTGTATCTGATAACGCTCCAGCATACTTGTCAGCGCAAAGATATTACGCATATCGTCGTCTACAATTAGCGCTTTTTTGCCAGCGAGTAAGTAATCTATAGAATGCAGTTGTTCAAGTATTTGTCGTTTGGGCGCTGGTAAATTTGCTTGGACTCGGTGTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 10 6500616-6500361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040094.1 Nostoc sp. TCL240-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 6500615 38 100.0 37 ...................................... GACGCTACGCGCAGGTTAACCAAAAGCAAATTTTAGG 6500540 38 97.4 33 .................................A.... CCATCATCATGATTTGTTGCGATAAACACGGGA 6500469 38 100.0 33 ...................................... ATGTCTGTTACTTCAAAAGATGCAGGAACTATA 6500398 38 97.4 0 .................................A.... | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 98.7 35 AATTGCAATCAAATAAAATCCCTATTAGGGATTGAAAC # Left flank : TCTAGACCTTTCTGAACCTGTGCCAAAATACCACCAGCCAGTAATAGTACAAAAAAAGGAAGTCATCACACAAGGCTATGTTCTCCGCTTGTTTGTTGCCGGACATAGCAGTACCACCGAACGCATCCTGCAAAATTTACATGAATTGTTGGAGCGATCGCTTGGACATCCTTATACTTTGAAAGTAATTGATGTTTTAAGTCATCCAGAACAAGCAGAACTCAACCAAGTTTCTGCAACTCCTACCCTTGTCAAAGTTTGGCCGCACCCAATTCGGCGAATCGTTGGAGAGTTGGATCATGTAGAAAAGATTTTACAGATGTTAGCTACTAAGGAAAAATTTTAAGTTTTATAACGAAATTGAGCGTCAAAAGTAAAATGCAGAGGTTTGAGATGTGGCAATTGTTTTTGCTAGAAATCAAAGAAAGTCTGTAGTAAGCTCATGGTTTGTGAACTGCTTTGCAATACACCAGAGCAGAAGCGAAAGGCGGTTTCGGTCA # Right flank : GAGCAGTACAGACAAATTAAATTGCAGCAGTCTTAGAGGTTGTTTGAAAAGTAGTATATTGTGATTTTAATCGAATTATTACCGGGAGCATCCCAGTTTTTTGCAAAGAAGACGAAAATCAGTCAGGATAGGTAAGACGAGTGTATTTACTTACCGATGACCCCAGAACAAAAGCAAGCTCTTCAAAAACATATTCAGGCGATTGCTAAAATATTGTATGAAGATACGTCAAAAGAAAAGCTCACAAATCTTGCAGCAATTGAAGAAGCAGTGCGGAGTCAAATGCAGAAGCATGTTATGCCAGAAGTAGGGGTTTTTTTATCGAAACGATTACAGGGACAACCGCAGGATACCAACGACGGCTCAAAAGCATTCTTGGAGAGTTAGCAATAACGAGCAAACAAGCCATTGAATTAGAAGTCGCACCAAGTACTCAACTGAGTCCATATCTAGAAACTTGTTGTTTGAGGGTAAGTGCGAATGTCAGCTATGAAGATGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATCAAATAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : AATTGCAATCAAATAAAATCCCTATTAGGGATTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //