Array 1 963043-962146 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483384.1 Streptococcus pyogenes strain NCTC13743 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    963042	    36	 100.0	    30	....................................	CCAAACGTCATCAAAAGCTTTTTGAACTGT	
    962976	    36	 100.0	    30	....................................	TATTTTAGCAGATGTGTATGTCAAATTGAT	
    962910	    36	 100.0	    30	....................................	CAACGTTTTATATTTTTCATCATAGATGAA	
    962844	    36	 100.0	    30	....................................	GGATCTTCTGACAAGCATTATTAGACACCG	
    962778	    36	 100.0	    30	....................................	AACTTAATTTACTTAATTATATCACGAAAG	
    962712	    36	 100.0	    30	....................................	TCCTCAACAGTTAATTGACCAGTCCTGATG	
    962646	    36	 100.0	    30	....................................	TGAGGCCTTATGTGGATGGTGATAAAGTTA	
    962580	    36	 100.0	    30	....................................	AGCAGATGTCTTGCTTGAAATTATTGGTGT	
    962514	    36	 100.0	    30	....................................	AAGACCCAATTCAATAAACATGCTTCCTAA	
    962448	    36	 100.0	    30	....................................	TTACTCCAATAAATCGATTGACGAATCATT	
    962382	    36	 100.0	    30	....................................	CTTACGAGCTGAGTTTACTCGTAGTAATCA	
    962316	    36	  97.2	    30	......T.............................	TATCGTTAAAAAACAGAAAGGCGGTGGAAA	
    962250	    36	  97.2	    30	......T.............................	GACATATTAACGTCCTTTCTCCTGCTTTCC	
    962184	    36	  97.2	     0	................................T...	|                             	CT,T [962149,962155]
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.4	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACAAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAGGCG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
//