Array 1 1370851-1372318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039516.1 Salinivibrio sp. YCSC6 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1370851 28 96.4 32 .............T.............. AGCTGAAAGACGATTATCAGTTTTGGGTGATC 1370911 28 96.4 32 .............T.............. GAACGGATGGACGTGGCACCGAATTGATAACC 1370971 28 100.0 32 ............................ TACTTTCTCAGCGTCGGTGTAACCATCGCCAA 1371031 28 100.0 32 ............................ TAGATGATGCTTTACAGCGGTTCTCTTTGTAT 1371091 28 100.0 32 ............................ TTGATGAGCCACTTTTCGGTACGTCAGAGAAG 1371151 28 100.0 32 ............................ ACCAGCCTTTTGATTGCACGTCGCGCCAAGCA 1371211 28 100.0 32 ............................ AAACCGCATCATCCAATAAAGGGTTACTGTGA 1371271 28 100.0 32 ............................ TTGATGCGGTGAATTTTATCAACGGCAACGAT 1371331 28 100.0 32 ............................ AGTACAATGACAACGAGCTGCGCAATGTCAAA 1371391 28 100.0 32 ............................ TTCATGTTCACGCAGCCAATGTTTAACCATAA 1371451 28 100.0 32 ............................ TCGCTCAAATCGCGCCTGTCTTCAATCATTTT 1371511 28 100.0 32 ............................ TCTCGCTGGTGGACCAAGCAAAAGCACAGATT 1371571 28 96.4 32 .............T.............. AGTCATATCTGTTTCACTCATTGTTGGTTGTG 1371631 28 100.0 32 ............................ GACGGTTTCACCGACGATATAAAGCGCGGTGT 1371691 28 100.0 32 ............................ TCAATACAACGGTTAGCAATGCCCGGTAATTC 1371751 28 100.0 32 ............................ CATAATTTCCTCGCGTATATGTCGTGACCATT 1371811 28 100.0 32 ............................ AAGGGTAAGTAGTCGGTGACATGAAGCTAACA 1371871 28 100.0 32 ............................ AACAGCGGATTTTTCATGGGAAGACAGCGCGC 1371931 28 96.4 32 .............T.............. AGTCAAAAGCAGCATGGAAGACATCAACGAAC 1371991 28 96.4 32 .............T.............. TTAACGCCGTCCAGATTTAAATATCTGTCGTC 1372051 28 96.4 32 .............T.............. TATTACAAGGTTTACAGCAAGTCGGTTAAGCG 1372111 28 96.4 32 .............T.............. TGGTCGTAGTTCGTTTTGAATGGTTTCAAGTG 1372171 28 96.4 32 .............T.............. ATGATGGATCCGTTTTGACTTGCCGTAGAGCC 1372231 28 96.4 32 .............T.............. TTGCGATCCACCATACTGAGCTATGTTTTGCT 1372291 28 96.4 0 ..........................C. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTGCGATTGGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTACGGCCCACAGACGCCGAACGCAGCGCTTTGTGCTTGGTTTTACGCCCGTTTGTGCGTTCACGCCATACCTTAAAGCTGCGCGGCTTTAACTCACGGCGCATCAGCGCAATAACATCATCTTGTCGCAGGCCATAGAGTGTTTCAATGGCTTCAAAAGGAGTCCTGTCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGCTCGTTCAAAGCCATATCTGTCTCCTTATGCTGGTGGCAAATAATACGGGTAGCACAGGAAAAACCGATCAGCGTGTTCTTTCTGACCAATCAATGCTTTTACCCTTGTTTTTGGGATATTTAAAAATAAACCATAAATACAGTTAGTTACGAAAGGCCCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTATCGAACGATTGTTAGGTTATTCTATT # Right flank : ACTGAAATAGTTGCTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATAGAGGAAGTAGGGGGATGGTTCAATATCAACATAAGCGCATGACTGGTATTGACCATACACGTTAATTTGGCGCATGTTTGTAGCCAAAGTTAAGCTTGCAATTGCATGCTTTTGCATAGTTAAACAGGGTTTTAACGGTTGGATTGCCTTTCCCTTTTTCAAGTCGAGAAATATTGCCTTCTTTCGTCCCCATACGTTCTGCAACCTGCTGTTGAGTTAGCCCGGCCTGCTTACGCATACTGAGTAACATATCGATCAATTCAAACTCAGGCGTCAATTCATCGTATGCTTGTTTCACGTCTGGGTTTTGTAATGCTCTCGCTTTTAATGCCTGTAAGCTATTCATTTTTCACCTCTCTCATACGCCCTGTTGCCAATGCTAAGTCTTTCTTTGGTGTCTTTTGGCTTTTCTTCACAAATGCATGAAGGACATAGATGTTGGGACCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1381976-1383264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039516.1 Salinivibrio sp. YCSC6 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1381976 28 100.0 32 ............................ AACTAGTGATGCTAAGCGATCGCGCCGCGCTG 1382036 28 100.0 32 ............................ CAAAATCATCATTAGAAATAGAAAATATGCTT 1382096 28 100.0 32 ............................ TAACGGTAAAATCTACGGTATACCGTTTAACT 1382156 28 100.0 32 ............................ ACATCAACCGTTATCAGAGCAAGCACACGCTC 1382216 28 100.0 32 ............................ TTTTTGGAGGCGTCATGGTGGTCACTCAAGAT 1382276 28 100.0 32 ............................ ATTCTGAGTTTTGGTTTCCAGCTCCGGCGAGA 1382336 28 100.0 32 ............................ GTTATCGTCGGTGAATGTTTCAACTTCGAGTT 1382396 28 100.0 32 ............................ ATGTGGTACTAAAGGAACTTATTTTTTTGTGT 1382456 28 100.0 33 ............................ CAATATTCTGGCGCTTGTCGCGTGCTGGCTATC 1382517 28 100.0 32 ............................ TTTCATTCTTCACCCCCCCAGTACGGCTTGAT 1382577 28 100.0 32 ............................ GAAGTTCGCAGCTTGAACACTAGTGGTCGCTA 1382637 28 100.0 32 ............................ TTAGCGAATAACGCAGTGAACACCATTGTACT 1382697 28 100.0 32 ............................ ATCTGAATGATGCCAAGCGCGGGACCGTGGCC 1382757 28 100.0 32 ............................ TTTAATCATTAGATTTTCCTCGGTGCCTGATA 1382817 28 100.0 32 ............................ GTTCTCAAACTCGGCCATAGCCCCTAACACAC 1382877 28 100.0 32 ............................ ACTCATCTTCCAGTCGTTCCACTCAGGGTCAC 1382937 28 100.0 32 ............................ TGATAGACTTTGATTTCGATTTTGTCTTTGTT 1382997 28 100.0 32 ............................ TGAGCTGCGCATTGACTCAGCGCTGATTTCAG 1383057 28 100.0 32 ............................ TTAACGTCAGCTTTGGTTTTCGGCGCTGACTT 1383117 28 100.0 32 ............................ AAAAGGCGAAAACGTGATCGCGCTCGATGCTG 1383177 28 100.0 32 ............................ AATCAAAGAAATGATGGCGATTCGTAGGCATG 1383237 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGTGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAAATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACAAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAATAGGTGAGTTTTAACAGGGTAAAAAGATGATTCTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTATT # Right flank : GATACAAGCGCCGCTACAGTGTTGGATATATAAAAACTGTCAATGGGCGCCTGTCACGATTAGCGCTTATATCAACCGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATACGTTGTAATTTCTTAAAGAACAACTAATATGTTGTATGTAAGCCATAATACAATATTAAAGTTGTTTGGGGATGTGATGGTGTCACTAAAAGATATAGCGCGCGCATTGCAAGCCCGTCGTAAATCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTATCAGCGAGTAGAGGCGGGGAGTGATGTTCGGTTATCGACTTTGCTGCGCGTGCTTGAAGGGCTCGACCTGACATTAACGCTCGAGCCCAAAGCATCTCAAATGGTTGATGAGTCGGTAAACCTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCATAGCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1385188-1386055 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039516.1 Salinivibrio sp. YCSC6 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1385188 28 100.0 32 ............................ ATATTCAGCCGCGGTTATCGTCATTTCCTTTG 1385248 28 100.0 32 ............................ CTTCAAATCGCAGATTTGCACGCGTCGCAGAC 1385308 28 100.0 32 ............................ TCTCTAAGTTTTTCTCCTCTACGCGAGAGGAA 1385368 28 100.0 32 ............................ GTTCCGAGGTGGTCGACGCTGTGAGGCTGCGC 1385428 28 100.0 32 ............................ ATTGAGGATAACCAAGCATGAGCCAAAGTGTG 1385488 28 100.0 32 ............................ TCCCTCGGGCCAACTCGGCTTATCTCTATGAC 1385548 28 100.0 32 ............................ AAGATCAAACAAAGTGCATCACCCTCTTAACT 1385608 28 100.0 32 ............................ GTGACAACTACGGCGTGCAGTTGCTCGGTAAA 1385668 28 100.0 32 ............................ GCGCTGAGGCTGAGCGCATTTTTCGTCAACTC 1385728 28 100.0 32 ............................ CGCCTCGGTGTGTCCGACCTGTTTGTCGCGCA 1385788 28 100.0 32 ............................ ACGCAAAAAGGATTCATCACGCAGCTAACTGG 1385848 28 100.0 32 ............................ TGCTGCATTGTTGGCGTCGCAAGAGTGGGATA 1385908 28 100.0 32 ............................ TTGAGCTTGTCGGCAATATCAACAGGCTTCAT 1385968 28 100.0 32 ............................ CGACCGCTGCAGGCGCTGAGCTTGGCGTTAGT 1386028 28 71.4 0 ..............T.....TGGTTT.C | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGGACGATCTGTTACCCCGACCGTATGTTGCCGCGATTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGTAAGCGTTGGTATGATATTGGTTTGAGCCATTTTGAACGCTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATAAAACCGCATCTGTTGGATACGATCAACCTGGCACGAGATATCTGGCCAAATCAACTTGCGCAATTACCGATGCTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTTACCATCGATTCGTGAGCCAATCTAACGGAGAACTAAGCTGGCATCTTTTTACCCTTTTTTTTAGCCACTTAAAAATAAACAATAAATACAGCTAGTTACGGAATCCCTTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTATCAGATGATTGTTAGGTTATTCTATA # Right flank : CTAATCTCGGAACAACCATTGTGGATGGTTCATTCTATTAGTGAGGGTGTCTTTCTTTTCTATAGAATGACTAATTAACTGTACTCTTTCATGGCTTGGTATGTAACTCGACGTTTATCGTTAGTTTTATTTTTAGCGAGTAATCAAACAGTAACTCGTGATGTGATTATCATTGCCTAGATTCTTTCAATTGATGCAGAGATTCTCTTCTACACTAGCTCAGTAAAGATGTTTTTACGGATGTTGAGTGCTAGGAGTGGGGTATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGTGCAGGAATTGTCGTTAGTTTTGTGACTATCATCCAACTAAATGGGCTAATGAATAAAGTTGATGAAATGGCACAGGTTCGGTATGCCTCGTATCAAACTGCCGATGAATTGAGGCAAAGCTCTGATGATTTAACCCGTTTAGGACGAACTTATGTTGTGACAGGGGACGATAAATACGAAAAGATGTATATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //