Array 1 217815-218880 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZD01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2795 NODE_5_length_223062_cov_2.13982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217815 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 217876 29 96.6 32 ...............A............. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 217937 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 217998 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 218059 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 218120 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 218181 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 218242 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 218303 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 218365 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 218426 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 218487 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 218548 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 218609 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 218670 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 218731 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 218792 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 218853 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11976-13391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZD01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2795 NODE_17_length_102700_cov_2.44875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11976 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 12037 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 12099 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 12160 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 12221 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 12282 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 12343 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 12404 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 12465 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 12526 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 12587 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 12648 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 12710 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 12813 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 12874 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 12935 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 12996 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 13057 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 13118 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 13179 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 13240 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 13301 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 13362 29 96.6 0 A............................ | A [13388] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //