Array 1 1156-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALUQ01000040.1 Streptococcus agalactiae GB00923 ctg7180000003909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1155 36 100.0 30 .................................... AAAAATCGAAAAATAGATGTGCGTCCAGCA 1089 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 1023 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 957 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 891 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 825 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 759 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 693 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 627 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 561 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 495 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 429 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 363 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 297 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 231 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 165 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 99 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 56-421 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALUQ01000041.1 Streptococcus agalactiae GB00923 ctg7180000003910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 123 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 189 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 254 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 320 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 386 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGCTGTTTCGAATGGTTCCAAAACTTGCTGCTAGACCCAAACAGTTTATTTTTAGG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //