Array 1 13968-12810 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCK01000108.1 Streptococcus agalactiae FSL C1-487 ctg120000525433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13967 36 100.0 30 .................................... TATATTGCGCCTCCATATCCTTCAAAAGAT 13901 36 100.0 30 .................................... AATGAATTGTTCTACTCCATTAAACGGGAT 13835 36 100.0 30 .................................... CAAATCCCGCAGAGGGCGGTAGTTTTTAAT 13769 36 100.0 30 .................................... GGTGAAGATTTTATATCAAATAAAGCTAAA 13703 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGT 13637 36 100.0 30 .................................... TTGTTAGTCATGATACTGATTGGATGAATG 13571 36 100.0 30 .................................... CAACACAGCTGTAACGCTTTTGGTATTACT 13505 36 100.0 30 .................................... CATAAAATCTAAAAAAGAACTGTCTAATTT 13439 36 100.0 30 .................................... CTTTTTCCCAACCAAACCTAGCAATAAGAA 13373 36 100.0 30 .................................... CATTTGATGCGTCAGAAGTGGCAATGCTAG 13307 36 100.0 30 .................................... ATGAAAACCAAGAACCTGTTGTATCAGCGA 13241 36 100.0 30 .................................... TTCTGCAAAAGATTTATCGTTAAACTCTGC 13175 36 100.0 30 .................................... ATGTTTTTAAGAAATGTTCGTCTATTAAGC 13109 36 97.2 30 ..............T..................... TAAAGGAGTAATGATATAGTCTGAACTCTA 13043 36 97.2 30 ..............T..................... CAAGGACAAAAAACTTACTTTGGAATGGAC 12977 36 97.2 30 ..............T..................... TTCCGTTGCCAATTGTTAACAAGTAGTTGT 12911 36 100.0 30 .................................... AAATGCGAATAGCTTTTCCACTATCTGATA 12845 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AGAGTTAACTAATTTTCATGCTATCACAAAGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTTAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAAGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGAATCTCACCTATTAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //