Array 1 12794-13008 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFY01000156.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108 strain DSM 18382 NODE_314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12794 29 100.0 32 ............................. TTCTTCAACGGGGTTGTGTAACAAATCCCAAG 12855 29 96.6 32 ............................T CCGCGTTGGTCAGGGAAAAGTTAATCGGAAAA 12916 29 96.6 32 ............................T AACGTCATCCGGAACTGAGACACCAGATTCTT GGG [12938] 12980 29 86.2 0 .................A...T...A.T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : CGCAGTTTTTTAGTAATTATTTGGAGAGCAGGTGGTCCAATGTTTCAGGTGATGGATTCGACTACTGCCAGCAAGATAATGAATACCATACTGGTGGTAGTCAGGAGCACACTGTAAATCCATCTTGTAAATCCGTCTTACGAACAATTTCATAGCTGATGGTGTACATCTTTAGCAGTAAGTTTATGTAGCGATACTTAAGTTTGACTGCGTTCACCAAGTTGACATTGTCAATAATGAGCTCGAGTAGTACGCTTGATTTGAATAAGGAGATGTCTTTTCTTAGTTTGTCTGGTCACTATTAAGCATCGGTTTCCATGGCCTACTTGTATGCTTGGCTCAGTATTGCAGCTCAATTTTAAATTCGGCAGCTCCAATTAATAACTTAACGATAATCTATGACTCAATGTGATAAAATTAATAGTGTCTTAGTAATACAAACCAATTAAAAACGATGGGTTACTAATTTTGAAATGCCGGCACATCAAGGATTCTTTAGT # Right flank : CGAGGCCGGCTTCCTGCAATGCAGCTAGAAATGGCTCGGTATGACAATGACGCACTTAACCACATGACGGATTATCGATTTATTGAAGCATTGGGGCTTGATGAATCGCTGGTTAGATATATAAGGAGATGATGTGATAAATATTTTAAAGGGAGTTTTTATTAAAAAATATTCTGGGGGTAAGAGAAATGGATGAAGAAACAAAATTTTGCATTAATTGTGAGAAAAAGATACCTAAATCAGCGGAATTTTGTCCTTTTTGTGGTGCAAAACAAGTTGCATCTGATTCAACAAATGATAATGGAACGATCACACTTAAAGGGGCTAATGTCGCTGAACAAAATGAAATTTTTAGATATAACGAAAATAAACACCCGGGTATGTTTACCAGCTTCAAATTATATTTAAAAGATGCTTTTATAATTTCCAAACGAATTGGTCGGGCAGATTATTGGTGGTCTTATTTAACGGTTGCAATTATTCAATTTATCTTTAGCTTG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29712-29561 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFY01000007.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108 strain DSM 18382 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29711 29 100.0 32 ............................. TGAAAGATACATTAATCTTATCTCCTGATCAT 29650 29 100.0 32 ............................. TAAGGTGGGGTTCAAAGATGAGGTACCAAATC 29589 29 82.8 0 .....................T.AG.TG. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GAGAAGGATAAAATTATCTCTATTGGCGCAGTAAAAAAGGCAGAAAACGGTGCCTATAATTGCTTTTATAAATTAATAAGAGATGATCAGAAGATTCCTAAGCAAATAACAGCGTTAACGGCAATTACGTCAGAAATGCTGGAAAAGCAAGGAGTAAACTTAGATCTTGCACTTCAAGAATTAAGAGAATTTGTTAAGGAATCGGTAATTGTTGGGTATAATTTACGATTCGATGAAACCTTTCTTTCACATGGTTTTAGAGAATTAAAGCAATCGGCGCTATCTAATAAGATGTTGGATTTGATGCCCGTGGTTAAAAAGACTGAAAAGTTCCTTGATAATTACAGATTGGCCACAGTTTTAGCAGCATATAATATAAAAAATGAAACGCCTCATAATGCGCTATCAGATGCCAAAGCAACTTTAGATTTAGCGTTCAAACTAATGAAAAACGGCAAATTGCGGATTTAAGAATGGCGGTATAATAGGGATCCTTTAGT # Right flank : ACATCCCTTTCTTGCAGTTTCCTTAGTAGTACAGTTGTTTTGTGTTCAATAAACTTCTATTTCTTGAACGTTTATATGAATAAATAATGAGAAAAGCATGTGTTTCAAAATGCCATTAGCATTTCAAAACACATGTTTTATTTTACGATTCATAATTATTTATCCAACTGTTTTCCTTGATATAACGCATTGCTTACCAGATCAATTGTACTCATCCAAGCAATGTGGCCAAGTGCTTCTGAAATTTGTTCCTCTGATGGAAGATCTTTAGCAGCTGGTGTAAGACCCATCATTGGTAAAACGCCTAAGTGAAAGGCACCCCAGAGGCCTAAGCCAGCCATGGCACCATGGCCCCAACGAACAGGCGGTACCACATGTTGCAAGACGCTGTATCCTACCGCAAAAGTGGTTGAAAAGCCGAAATGAATTAAAAAGCTGACCCATGGCATCTTTTGTTCGGAATAAGTATAGGTAGCGTGGGTGACAGAAGTGGGGACACC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19471-19865 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFY01000073.1 Lentilactobacillus farraginis DSM 18382 = JCM 14108 strain DSM 18382 NODE_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19471 29 96.6 32 ............................C ATCGTCTACAGGTGATTCCAAGCTGGTTAAGG 19532 29 100.0 32 ............................. ACGGCCCATGTCACTCTTAACTTTGTCACCAT 19593 29 100.0 32 ............................. AGATTTCAATCGATTCTTATCAATGACGTCAT 19654 29 96.6 32 ............................C ACCAAAGTGTTAACCTATGGCAAAGGATCGTT 19715 29 96.6 32 ........T.................... ACCAGCTACACGAAGACAACCGTGGCTGGCGA 19776 29 100.0 32 ............................. ACATAGGAAAGCAGTGATCGCTGTGCTAAATA 19837 29 82.8 0 .................A...AC...TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GTTGGTAGATCAGGCAGCCCACGATAGTTATTCGGATCGAGAGGTTAAAGCGGATATTATCAATGGGGCAACCGATGCTAGCGTCTTCATTAAAAACAATCCTAAAATGGCCGTGGTTGTTTTGGGGCCGGATGCTTGGAAAATGGCACATCAAGTTAATGAATATACCACACTGACCAGCTTTTATGAGACAATTCAAGCTTATCAAAAGATTGCCGAGCGATATTTTAAATAGTTGCGCTTGAATATTTTCGAATTTATGCTGCACAGGTTCGAATCCTGCTTGGGGCACTTAAGCGAATCATGCATAAAGATGATAGAAAGTTTTATCGATTAACGTAAAACATTAACGGTAAAGCTTTTTATTACAGCTTCATTTAAAAAGTTATCGACGGTTTATGCGCTGCATGATAAAATTGAACAGTATCTTAGTAATGCAAACTGATTAAAAACGGCAAATTATGAATTTTGGAATGCCGGTATGTCAAGGATCCTTTAGT # Right flank : TTGAAACAATGATTATAAAAAACAAGGACCTATGAAAGGGGAGTGTCTTCCATTTCTGGTCCTTGTTTTTATTAAGCAGACAATATTTTTTAGAAAGCGGGCAATTTGTAAATGGTTGTTACGGTTGTCATATTTTAAAAGCTTTATTAAATTTATTAAGGTTAAACAATTGTAGTGAGGGAGACTTGACCTCACTATATCAACGGATAAGCATTTGCCTTAATCATTTTAACGATATATACTATAACTATAAAATAATTAAGATAATATGTTATTTATTGAAAGGAACGTTGCCTATGATTGACCCTAACGATGAAAAAATCCTCAATCTGATTCAGTCTGATGGTCGTTTATCTGTCAAACGGATTGCTCAAGCGTTATCCTTGAGTGGTCCAGCGGTGTCTCAACGACTAACTAACCTAAAGAATAAAGGCATTATCCGAGGTTATCGTGCTGAAATTGACCTGAATAAATTGGACCTCAGTGTTCGTGCTTTTGTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACGCATGTGGGGGTGATCCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //