Array 1 1-1187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIS01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46846 N46846_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 62 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 123 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 184 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 245 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 306 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 367 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 428 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 489 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 550 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 611 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 672 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 733 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 794 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 855 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 916 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 977 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1038 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1099 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1160 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17447-18148 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIS01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46846 N46846_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17447 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 17509 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 17570 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 17631 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 17692 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 17753 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 17814 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 17875 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 17936 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 17997 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 18058 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 18119 29 96.6 0 ............T................ | A [18146] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //