Array 1 293556-289001 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPC01000003.1 Bifidobacterium adolescentis strain TM06-4 TM06-4.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 293555 29 100.0 32 ............................. TTCGCCGATCACGTACATGGCATACATCTTCT 293494 29 100.0 32 ............................. ATGGTCATCGGCGCGCGCTCCCTAGGCAAGAC 293433 29 100.0 32 ............................. GTCATACCGGAAGTCTTCGGCGAGGCTATCAG 293372 29 100.0 32 ............................. GATACGGCAGCTGCGAACACTGCCAACAGTGT 293311 29 100.0 32 ............................. CCAGCACCATACAACCACATGTTTAACCACAC 293250 29 100.0 31 ............................. CGCCTACCAGTCGGCAGGTAAGCTACGGTTA 293190 29 100.0 32 ............................. CAAAACAAGCAGTTCCAAAGACTGCCGTGCTA 293129 29 100.0 32 ............................. GGGCACGGCTTCTGCTCACTGCCAGCGTCAAG 293068 29 100.0 32 ............................. GGAATGGCATCTCCGTAGAGGAGAATCTTTTC 293007 29 100.0 32 ............................. GTTAGGAAAAAAAGCGCATTAAAACCACTCCT 292946 29 96.6 32 ............................T CAGTCCAGGGACGGCGGCGAAGCCGCACTTGA 292885 29 100.0 32 ............................. ATTGGGTCGGATTCCGGGTTGTCGGGGTCGAC 292824 29 100.0 32 ............................. TGGCACGCCACGCCTATGCCGACAATGCTTCT 292763 29 96.6 32 ............................T AGCGACACGCAAATGCAAGCGATTATGTTACG 292702 29 100.0 32 ............................. GCTTTCACGTCGTGGCAGCCGACGGTCGAGAT 292641 29 100.0 32 ............................. ACGCGCATCAGTGCGACTTCCTCGCAGTTGAA 292580 29 100.0 32 ............................. CGACGAGGAACTTGCCCAGGAAACATACACTG 292519 29 100.0 33 ............................. TGTTGAATCGGGCGTATCCGTGCGAGGAGTGGC 292457 29 100.0 32 ............................. ACGGTGCACTCACCAATAGCAAGTTCCTTGGT 292396 29 100.0 32 ............................. TGCGGCAGGCTGGACTGGATCCATGTCTCGGC 292335 29 100.0 32 ............................. ATCAAGCTCAAACTCGACGAAAATGGCGTGCC 292274 29 100.0 32 ............................. TGAACGTGACCATGCAAGTGCTCGGAGACTAC 292213 29 100.0 32 ............................. GCAAGAGTAAGTCACGTGGTCACGGCAGTGTC 292152 29 100.0 32 ............................. TGATAGACGACCTTGTCGTTGGCTTGGAATGC 292091 29 100.0 32 ............................. CGTTTCGAACACGGACGGACATGTTTCACAAT 292030 29 100.0 32 ............................. ATGTGATCGAGATTGAATGAGTCATCTGTGGT 291969 29 100.0 32 ............................. GACGGCATCCTGCGTTGCGGACTTGATGAAAC 291908 29 100.0 32 ............................. TCCAATTCATTCACAAAATCACTATCACCATA 291847 29 100.0 32 ............................. ACTCTTTTCCGGTTCCAGTCCTTCGACGCGGG 291786 29 100.0 32 ............................. CCGACGTGCACCTCGAGGTCGCCGGCGTCAAA 291725 29 100.0 32 ............................. GGACGGTCCTGCTGGTCGAGCGCGACCAGCAC 291664 29 100.0 32 ............................. TGCACGCTGCCGCAGTTGCGGTTGGCGACGAT 291603 29 96.6 32 .......................A..... ACGCGAACCTCAGCCGCCCACTGACCTTGAGC 291542 29 100.0 32 ............................. TGTTCTGCAATGCGCCGAAGGACGCGTTGAAT 291481 29 100.0 32 ............................. GTGTCGCGTGGCGATCTTGTGCAGGTGGTGTC 291420 29 100.0 32 ............................. GCCGAGACCATCAAGAAGGCCATGAACGACAG 291359 29 100.0 31 ............................. CAGCTGGGTGTGGTCCGGACGAGACAGCATG 291299 29 100.0 32 ............................. GTCGCGGACATGTCATCAATCCATTCATCGAA 291238 29 100.0 32 ............................. ACCGGCCTGTACGCGTCCGGCTGCTGGTTGTC 291177 29 96.6 32 ..........T.................. CCCACAGGCGGGGACAATCAAGGTTCGGACGT 291116 29 100.0 32 ............................. GTACACCTGCGTTTTCTCGCCGGTCATGGCAT 291055 29 96.6 31 ...........................A. GTGGCGGTGATGTCAGAGCTGCCCGCCTTAT G [291027] 290994 29 100.0 32 ............................. AAGGTAGGATTGTTGTAGTTGTTGACACCCCC 290933 29 100.0 32 ............................. GTCGCCCTTGCTTGCCAGTGGTCGAATATCGG 290872 29 100.0 32 ............................. GGAATGTCCGCAATAAGGGCAGGACCAGACGA 290811 29 100.0 32 ............................. CGCAACGTGCCGACGCAGAAGGCCATGGACTT 290750 29 100.0 32 ............................. AGCGAAAACGGCACCAATTACCCATGCCGAGC 290689 29 100.0 32 ............................. ACACTGGATCGTCTTTATGAAGGAGGATACGA 290628 29 100.0 32 ............................. ATGGCCCATGACTTGGCGGTCACGCAGCAGGT 290567 29 100.0 32 ............................. TATGGACGCTCTACCCGAAACACGTGGCCAAA 290506 29 100.0 32 ............................. GACGTGGCCCCAGTTGATGCTTGCATCCATAG 290445 29 100.0 32 ............................. TGCTAAACCTTGGCGGGTATACAATCACGAAA 290384 29 100.0 32 ............................. AATCTCACCAAGGATGAAGCGCAGTCTCTGAT 290323 29 100.0 32 ............................. CAACGAGAGGTTAATTAACGAACGCGATTGGC 290262 29 100.0 32 ............................. ACATGGCTCCGCGACCAGTGGGAGACATGGGC 290201 29 100.0 32 ............................. GGTAGCGGAACCGCTAGCGAAACGTCTGGCAA 290140 29 100.0 32 ............................. TTGGCTCCCTGGATGGTCTTGTTGCCGTCGGC 290079 29 100.0 32 ............................. GCCGATGGTGACGCCGAGGAGGTCACCAGTGG 290018 29 100.0 32 ............................. GAGGAACAGTATGGAGATCCGGTGGTCGTGAA 289957 29 100.0 32 ............................. TTGGCTCCCTGGATGGTCTTGTTGCCGTCGGC 289896 29 100.0 32 ............................. AGATAAAGAGCAGCTTTGTCTTTCCAACCGTT 289835 29 100.0 32 ............................. GGACTCCTGCAAGGCATCGTCGCAAGCCTGCC 289774 29 100.0 32 ............................. TTGTGACTTTGGCCGAAGCTGCTACCCCGGTT 289713 29 100.0 32 ............................. GACAAGGTGGTCTACGAATTCGCCACGAAACT 289652 29 100.0 32 ............................. CGTGCTCAAGCCTTGCAGAAAGTCTTGCACAA 289591 29 100.0 32 ............................. GTCGAGATCTTGCATGATTGGCAGCAGATTCT 289530 29 100.0 32 ............................. GTCTTACCGAGACCACGCGCACTGATAATGAA 289469 29 100.0 32 ............................. ACGGATAACAACGGCGATATGGTAACGGTGCT 289408 29 93.1 32 ...T.........G............... ACTTAAATTTGGACGTCAGGCGCCCAGATTGT 289347 29 89.7 166 ...T......T.....T............ AACGGCACGAAACACATATCCGCGAGTTATGGGTGCTCGACATATCGGGACTGCATCAGATCCAACTGAAATAGAAAGCCCGAAGATAACCCCCCGACTGATGTTCCAGTCTTGAAAGCTGGTCGCGTGGGATCTTCGAGCAATCCAATTCTACCACCACGGCACC T [289320] 289151 29 89.7 32 ...T...............A....G.... CACGACATGCAGGACTACCAGCCACTCGGCAG 289090 28 93.1 32 ...-.......G................. GCGCTCGAAAACAAGCTGCGCCAGCGTTTCAA T [289083] 289029 29 86.2 0 ...T......................TGT | ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 73 29 99.1 34 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TTGGGCTTTGGGATGATAAGCAGGGCGAGGTTTCTGCAGGCAAGTCCTACTCGGATAATGACGAATGGGATGGTGGGACATGGTAGTGATTGTGCTGACTGCTTGTCCTGTGGGATTGCGGGGTGATCTCACTCGTTGGTTGCTTGAGATAGCCCCAGGAGTTTTTGTGGGACATATCGATGCTCGAATTCGAGATAGGTTATGGGAGAGAATCATTGATTTGCTCAGGGATGGTCGTGCCGTAATGGTTTATTCGGCCAGAAATGAGCAGCATATGGCTTTTAAGGTGTATGGGGCTGACTGGTCACCGGTCGATTGCGATGGATTGCAATTGATCAAACGTCCTAAGGAAGCAAAAGAAGGATCCTTTGTTGGCACTCCTAGAAAAGGATGGAGTAATGCGAGCAAATACCGAAAGGCAAGGAAATTTTCAAAACGAAACTGAATGAAAAACAGCCAGTTGTCCTTTCTTTTCCTTGGAATTATGCTATTTTCGAAGT # Right flank : ATTTGTCAATCTATCAGTCGCATCGCATGTGCGTTAGCTACACTTATCCGCATAAGTGTAGCTAACGTTAAAATAAGCTACATTTATCTCGATAGGTGTTGCTTACGAGAGTTTTTGCGATGGATAATAATTTCAGCCATTTCGATATACATGAATCCGTAGGGGCCACAACGACTTGTGTTTCCGATTTACAAGCGTGGCTTTGCTTAAGAACGTGATTTTGTCCGGGGAACGATGCGCTTGACACATACTGGCACTACCAACGGAGGAGCACCATGAAATACGAGATTGCGATTTGCAAAAGTATGAAACGTAAGAAAGGACGCAGTCGCGCTTCGATATGTTTTTGATTGCGTAACGGCGCGACGGCATCGCTTTTGCGCATGTCGGGCGCTTCGTTGCCGCAACCGGCGTAAGATATCTGCGAATGTCAAACATAAGCGAGATATCTGAAGGAGAGAAGATGTCAACAAACGAAGCAGCATTGCCGCAGTCGACGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //