Array 1 317380-319299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZC01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2796 NODE_2_length_442446_cov_3.21381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317380 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317441 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317502 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317563 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317624 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317685 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317746 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317807 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317868 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317929 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317990 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318051 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318112 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318173 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318234 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318295 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318356 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318417 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318478 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318539 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318600 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318661 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318722 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318784 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318845 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318906 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318967 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 319028 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 319089 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 319150 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 319211 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 319272 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335432-336071 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZC01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2796 NODE_2_length_442446_cov_3.21381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335432 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 335493 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335554 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335615 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335676 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335737 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335798 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335859 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335920 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335981 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 336042 29 96.6 0 A............................ | A [336068] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //