Array 1 32-1812 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000010.1 Thermococcus sp. GR7 NODE_10_length_41775_cov_67.615492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 32 30 100.0 37 .............................. TACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 99 30 100.0 38 .............................. AAGAACACCATGACGAAGACCATTGCAACTCCGTACAT 167 30 100.0 38 .............................. TACCTCATGCCCTCACCCCCCACGCGGTGAGGCTCGCC 235 30 100.0 38 .............................. CTAGCCGCGCTGGGGGTGCTGCCATGAGGAAGTTCTAC 303 30 100.0 40 .............................. AGCTGAGTACCACTGTCATGGAGCATCGCGGAGTCGTGAT 373 30 100.0 38 .............................. GCGTTTGTAGTGATAACTGCATAAACATACGCGTCGAA 441 30 100.0 36 .............................. AGAGGCACTTCACGACAGCATAATCAGCCACGGCCA 507 30 100.0 37 .............................. GCAAAAAAAGGTAAGGAGGGATGTGGAGATGGCGGTT 574 30 100.0 38 .............................. CCGACAAGTTGAAAGCCTTGTTACCACCGCTGTTGATG 642 30 100.0 37 .............................. GCGAGGGCTGAGCGTCGTGGGGAGATTGTAGAAGCGG 709 30 100.0 38 .............................. CTTAATGACTTCGTGAAAGAGCACTTTGGCATCTCAAT 777 30 100.0 37 .............................. ACAATACTCAAGAGAATTACAGCTGGATAATCAGCTC 844 30 100.0 38 .............................. AGAAGTTCAACGAGGTCTTCAAGGAGCAGTACAGCGGG 912 30 100.0 38 .............................. AAGAGCTGGAAAAACTCTATGAGGTCGAGAACCTTAGC 980 30 100.0 37 .............................. CCGACGATGCCGATAATCATGTTCAGGTCACCCTTCA 1047 30 100.0 37 .............................. TTTTTGTGGATAAAAGTTAAAGCGGTGGCTAGTCCCC 1114 30 100.0 36 .............................. CTTTGTGAGTTTGTCTTTGTTGAGGCCGAGGAATGA 1180 30 100.0 35 .............................. TGACTCGGCAATGAAGTCCCTCAAAAACTCCTCGA 1245 30 100.0 38 .............................. ACCGTCCGGCTGAGGAGGTAACGCTGGAGAACTACAAA 1313 30 100.0 38 .............................. TGAGGAGAAGATGAGAGGAAGCAGGGAGACGTTCATAA 1381 30 100.0 37 .............................. GTATTTTCGTCGTATTCTACCAAGGTGGGGTCAGTTG 1448 30 100.0 37 .............................. GACCCGCATGCGCTGGACTTCCTTGACGGCTACCAGT 1515 30 100.0 37 .............................. TTTTAAATCGACTGGTTGAGCTTCTCAAAAAATATTA 1582 30 100.0 38 .............................. ACAGCACCCTCGACGTTTCTACGACAGTCGTTCAGGAG 1650 30 100.0 36 .............................. ATCATGTGGGTGGCTGGGTCATCGAGCTAACAGAGG 1716 30 100.0 37 .............................. CAAATTCCAACCGCCGAAGCTAGTGCCCCATTTCCTA 1783 30 90.0 0 ............T...........C....T | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 99.6 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : AAGCCCGTATATCGTCAAAAGGGGCGGCGATG # Right flank : TTACAAAAGCTCTCCAAAAAATAAATCCTCCTTCGTCCCCCCAGCCTTCCTGAAGACCTTCTCGCTCCAGCTTACGTTTCCAACGCTTCTCGGCCAGTGGGCATCGCTGGCAAAGGTGAGCTTTATACCTCTTTTTATGCACGCCCTGATGAAGTCCAGTTCGGGGACTTTATAACGTGAGCTTATCTCGAAGGCCTTTCCATTCGCTTCGGCCAGCTCTAGTATCTCCCTCAGGCCCTCCTCGCTTGGATAGCCTGTGTAGGGGAAGCTCGCCCCGAAGTGGCCGATTACGTCAACGTTCTCGTCTTGGAGGGCGAGCTTAACGAGCTCGACGTGTTCCTCCGGCGTCTCCACCCACAGGTGAACGCTTGCTATCACGTAATCAAGCTTCTTGGCTATGTCCGTGGTTATATCGACTCCCCCGTGCATTATATTGGCCTCCACTCCGGCTAAAACGACGAGCTCGGCACTTTCGCTCCACTGGCGTATCTCTCTGACGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 199-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000196.1 Thermococcus sp. GR7 NODE_197_length_229_cov_119.490196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 198 29 100.0 38 ............................. GTGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 131 29 100.0 38 ............................. CCGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCCT 64 29 96.6 0 ...G......................... | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 98.9 38 GTTTCAATAAGACTCTAAGAGAATTGAAA # Left flank : AGCCGAGTAAATAATCCTCTGCGAGATGTA # Right flank : ACTGGCTCATCACCTCACGGGGCTTCGTCCTCCTCT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 770-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000021.1 Thermococcus sp. GR7 NODE_22_length_831_cov_107.684659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 769 29 100.0 37 ............................. TAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGAC 703 29 100.0 39 ............................. TCTGCCAACCCGCCTGGAGGCAACTTCAATCCAAATAAA 635 29 100.0 39 ............................. TACAACTCTATATTCAGACCCCCACAAGAGATCCATGTC 567 29 100.0 39 ............................. TCCCTATTGGGTGATGGGTGGCTATATCGTACATAGTGG 499 29 100.0 38 ............................. TCCATAACTTCCTCCTCTTATCCACAACCATTATGAGA 432 29 100.0 38 ............................. TCGGCACCGTTCGGGGTACGGCTCGCTTCATAGACCAG 365 29 100.0 38 ............................. TGCGCTTATAGTGGCGCCAGGCGTATCTATAGTGCCTC 298 29 100.0 40 ............................. TTCTAAAACAAGCGAATCGCTATAATCAGGGCTCTTCGGC 229 29 100.0 37 ............................. GGATTACCTCGAGGGTCTTCATGAAGGTCTTAACGTC 163 29 96.6 38 .................G........... GAAAACCAGCCGAGTAAATAATCCTCTGCGAGATGTAG 96 29 100.0 38 ............................. GTGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.7 38 GTTTCAATAAGACTCTAAGAGAATTGAAA # Left flank : CAATAAGACTCTAAGAGAATTGAAATGCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCA # Right flank : A # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 32-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000197.1 Thermococcus sp. GR7 NODE_198_length_229_cov_60.774510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32 29 100.0 38 ............................. CTACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 99 29 100.0 37 ............................. TGCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCAT 165 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 98.9 38 GTTGCAATAAGACTCTAAGAGAATTGAAA # Left flank : AAGCCCGTATATCGTCAAAAGGGGCGGCGATG # Right flank : TAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 568-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000032.1 Thermococcus sp. GR7 NODE_33_length_630_cov_189.990060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 567 30 100.0 38 .............................. TGGCTCATCACCTCACGGGGCTTCGTCCTCCTCTTCGA 499 30 100.0 37 .............................. CTTCATAGCTCCTCCTCCTTTCGTGGTGGATATCCGT 432 30 100.0 38 .............................. TGATGAATTCGCCGATTGGAATTCTCGGGAAAGCTACA 364 30 100.0 37 .............................. CAAAGCTGCGGTCTCCAACCTAACGAAAGACGGCGAA 297 30 100.0 37 .............................. GGAGATTTCGAAGTGAGAAGAATTAAAGCAGAATTGA 230 30 100.0 38 .............................. AACATTTGGCCAACTTCTCCGGTTCTGAACCACATCTT 162 30 100.0 36 .............................. CTTATAAGCCCGTATATCGTCAAAAGGGGCGGCGAT 96 30 100.0 37 .............................. TACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.6 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CAATAAGACTCTAAGAGAATTGAAACCGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCC # Right flank : A # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 87384-86072 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000002.1 Thermococcus sp. GR7 NODE_2_length_374209_cov_59.544399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 87383 30 100.0 36 .............................. AAAGCATATCTTCCATACCCATAGTGCCGACCTCCT 87317 30 100.0 38 .............................. AGCCCGTACTGTCTTTTTGGCTGGTCTATGAAGCGAGC 87249 30 100.0 39 .............................. TGCTGCCAAGCAAGCAGAGGGTCGACCCTCTCCTCCTAC 87180 30 100.0 37 .............................. AGGCCTTGGAAAGGTACTTCAAGGTCAAGGAAGGTCC 87113 30 100.0 37 .............................. ATAGCGCTTTTTATCAACAAAAATCTGTGTTGTGCTC 87046 30 100.0 37 .............................. AGGTAACCAAAGAGCAACGTGAGCGCTAGGCCGATGT 86979 30 100.0 36 .............................. ACGCTTCTGTTCCTTATCATAGTCTCCGAAATACAT 86913 30 100.0 39 .............................. CTAACAGGGCAATCGTCGTGCTGAATTTAGTCATTGTTG 86844 30 100.0 38 .............................. CGAACAGGCCGCGCAGGGCGCCGCGCAGGCGAGCGGCG 86776 30 100.0 38 .............................. TAGTTTATACTGTAAGGCAAAGCCCAGAAAGCGTTGAT 86708 30 100.0 37 .............................. TTTTTTCCCTTTCCCCATCACTCAACCCTCCTTAGCT 86641 30 100.0 38 .............................. TGAAGTCAAACGTGCTGACGGCTCCGCCCGTGTTCTCG 86573 30 100.0 38 .............................. GGACGGAAGTTATGCGGGCGGCGAACTATGGGCGTTAT 86505 30 100.0 37 .............................. ATTGGTTCTGAACTGGCGCAAGGTGGCGCTCGGCGTC 86438 30 100.0 36 .............................. CGCAGAGGACGTGTCCCTCCCTCGCTATCACTAGAG 86372 30 100.0 38 .............................. TTGCACTGTCCTTCACACTCATTGCTGCGGTCGTGCGG 86304 30 100.0 37 .............................. GAACATGACAAAGCTCTACACGCTCGACAACGGCTCG 86237 30 100.0 37 .............................. GTCTAACGGTTTCCCTCATTTTGCCCCTCAACCTATG 86170 30 100.0 37 .............................. TTCAATCTCTGCGAGCTTTTTGTATATCCAAACTACC 86103 30 96.7 0 .........................C.... | G,T [86075,86077] ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.8 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CTGAATAAGGTCTTTTAGGGATTTTGGAAGGCAGTATCAAGTTTGGAGGGGCACATTTTGGAACTGGCGTACTCTGAGGATTTAAAAGGAAAAACATGGCACTGTCGTCGGATGGGAAGTCTTTAGTAACATAAAGTAATTATAAAACTTAATGTTGCATCAAAGACATTTGATGTAACGAAATTTTTTCTAAAAGTTAAGATGAAACTTCATGGGCCTCCAAAAAGTCAGCAACCTGTTTAAACTCGGCGTTTTTATAACCCAAAGGGTCGAATTGCTCGTTAAGTCAATCACAGCGATCTCTATCCTCTGGAACTTACAATGATTACTACACACAACACCAGAAAGACGTCTTGGAGCTTTCTATTCTCCAATTGATCATTTTAATCCGGAGATTTCCACGGCCATATAGATACGCATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGCTCTCATAATCTTTTGTTAGGCAGAAGAAGGAAAAAGCCGCCCT # Right flank : TTCTTCTGGGAAGGAATTAATTACATAATTCTACAATAAATCAATAATCTAATTGTGCAAAGATAGATCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTGGAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCACTCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACACTGTACTGGTCAGCCCATTCCGGATACTCGATGGCCTCAACCATGTCTCCCCTGATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTATGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCAGGCATGAGGTCAGTCTGGGCGTTGCTGACATCGACGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1019-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000005.1 Thermococcus sp. GR7 NODE_5_length_188383_cov_62.340218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1018 30 100.0 36 .............................. AGTATATCACAAGGGGCTTCGCCTTGTTTTCGAAGT 952 30 100.0 39 .............................. AAGCTCCCGTGAAGATAGAAAATATATGGTATTTAGCGA 883 30 100.0 37 .............................. CGGGTTAATCTTATTCATATTATATATTATGAATAAG 816 30 100.0 38 .............................. TTTATCTCAATCAAGACTTTCTCCTTCCCGTTCTCGTC 748 30 100.0 39 .............................. TACAGGTGGGAAATTCTAAATTTTGTTATCGATGTGCTG 679 30 100.0 41 .............................. AAGGAAGGTGTCACCGTCACCGCAGTGGCGCAGATGCTCAA 608 30 100.0 37 .............................. AGGCACTACTGGGTCTCCGGAACTCAGGCCTCTGGAG 541 30 100.0 36 .............................. TGCTGCGTGCTCAAGAGTGTAGAACACAACATCAAA 475 30 100.0 38 .............................. GGGATCCACCTTCCGCTTAAAGTCCTTAGTAAAGCGAG 407 30 100.0 39 .............................. GTGGTACGAATACTCCCAAAGCGCTATCCGCATCTCAGT 338 30 100.0 37 .............................. GTAGGAGGTGCATTGCGTTTTCCCTGAGCATCTCCCG 271 30 100.0 36 .............................. GAGAAGTCGTGGCGTCCTTGTCAGACGACTTCTACC 205 30 100.0 44 .............................. AAGATCTCCTTTATATCCTCCTCCGTGGCGAAACCGTGTTTCAA 131 30 100.0 36 .............................. GCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCAT 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 15 30 100.0 38 GTTTCAATAAGACTCTAAGAGAATTGAAAT # Left flank : GGGAGCTTATAATCGTTGCCCGAAGGGTTTTCGGAGCAGATTCATACTGCGGCATCTTTGGCCCTCTCACTTCAACGTCCAGAGCTTTGGGAAAGCGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACGCCTGGTAATTATCGGACTTTTTGTTACGATTTTCATCTTGGAATGTAACGAAATTTTTTCAGAGTGTTGAGAAGAGCATGATGCGACGGTCTCCAGCCTATTTTCTAAGGGAAACTGCTCTTTTTGACTGTTGCATGGTTTTGAAGTCTGGAGATTAATTTTTCTCTTTTCTTTGGGCTTTGGAAGTCTCGTAAACATTCTTGTTCACAGGATTTTTTAAGCTGTGCAGGCCTGAAATTCTTAGAGGAGGTTCTTGAAAGATCTCAATGAAAGAATCCTCATAGCGCTGAAACTACCCCTCCGCAGAAAAACTTATAAGATTTAAGGCATTTTATACCCCTATAAGACGAAATAAGGAAAAAACTGCCCT # Right flank : TAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1204-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000006.1 Thermococcus sp. GR7 NODE_6_length_114721_cov_58.006492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1203 30 100.0 37 .............................. TCTTGTTGCGGATTATGGCGGTTGATAGTATCATGAC 1136 30 100.0 37 .............................. ACCCTCAACCGCGAGAAGGGCCTGTACTACATTGAGA 1069 30 100.0 37 .............................. TGTCACGCAGGTGCATCCTCGCCCTAGCCTCCATCAA 1002 30 100.0 36 .............................. CAATATAGACCGAGAGCAACAAATCCTCACGGGTCA 936 30 100.0 37 .............................. TATCATAAGTTGGATCCTGAGCTGAGGGAGAAATACA 869 30 100.0 37 .............................. CATGCTCGCGAGGCTGTTGTTCATGTCTCACCCCTCC 802 30 100.0 38 .............................. CAGCGTGGCTCCAGGCTTCGCGAATAACGTTCTCGATG 734 30 100.0 36 .............................. GCCATCGCGTTAGCCTGCTCATCTTCCGTCCACTGC 668 30 100.0 36 .............................. TAGACAACTGGGACGATGTGAGCACTTTGGAGAAAG 602 30 100.0 37 .............................. TGCATGCTCAAGGGTGTAGAACACAACATCAAAGTTG 535 30 100.0 36 .............................. AGTTGCAGTATGCAAGTGCTCCATATCCGCCGTTGA 469 30 100.0 39 .............................. GCATCAAATTACCTCACTCTTGACCTTGACGTTTATAAG 400 30 100.0 37 .............................. CGAAAGAGATTGAGAAGAGCGAAAAGAAGAGCAAGAA 333 30 100.0 38 .............................. GGGGCCGCTTGCCGAGCTTCTTGAACTGCTGTACCTCC 265 30 100.0 36 .............................. ATTTACTAACCTCAAGTTACTAAAACCGACAAAAAA 199 30 100.0 38 .............................. AGTCTCCCTTAAAGTAGTATGCCCTTTTGTCATGTCTA 131 30 100.0 37 .............................. CGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCCT 64 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : GTAGAAACAACTAAACGCCTTCTTTTAGATTGCATCTCGTTCACATCCCTGTTTTTCTTGAATTTTCTGTTAATCGTTTCAGAATTTAAAAAAGAACTCCGTTTGACCCATTGGAAGTCTTTAATAACAGTTTGTGATAGTGTTACTTTGAGTTATAAAATTTCAAGTTAATTGTAACGAAAAATTTTAGAGATATGGGAATTGACGTGTAAGGTGCCCTCAATTCTGTCGATTCCTGCCCTGATATGTCTATTATCGGATTGGACTGGTTTTTTGCTGTTGGAGATGATAAAAAGGCTGCTCCGGGCTTTGGAACTCTCCAGCGCTGTTAATGGGTTCTCTGGAAAAAACGTCGAGAGGGTCTTGTCCCTTGTGTTCAGTTTGCATATCCATTAAAAAGCGGACAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTCTTAATTCTTTCTGAGGCAAAAGGGGGTAAAAGCCGCCCT # Right flank : CTGGCTCATCACCTCACGGGGCTTCGTCCTCCTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000007.1 Thermococcus sp. GR7 NODE_7_length_93339_cov_63.003283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 69 29 100.0 40 ............................. TCATAGTAGGTGTATCCACCGAAGATGTGAACCCTTGTGA 138 29 89.7 0 ........A...............A..G. | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 96.6 40 GTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : TG # Right flank : CCCCATTACTGTCCCGCTTGGTTTCCGTAGAACGGCTCGTATGGCAAGAGCGGGAGCTAACGAACGAGCTGAAAGCCTGACCGGAACGTTTCTTTAGAGTCAGCGGATATTCAAAAAGAAATAAAACCTGATTTCCACGGGGTTAGAAGAAAAAGGCATTCAACAATAAGAGTTATAAAGATAGAGCATGCACGTTAAAGACGGTAACCTTCCGGGGAGGATAGATTATGCGCATTAAGGTCAGTTTTTATCCCCCTGATGGTGGGTTTATTTATCCCAACAAGCACGCCGTTCAGGGGTTCATCTACAACATGCTGAAGGGCACGGAGTACGGGGAAAACCACGACGCACCGAGGTTCAAGTTCTTTACATTCTCGGACTTTTTCATAGACTCCCTGGGAAGGCCGACCTTCTTGGTCTCCTCCCCGGACGAGGGCTTCGTCAGGGCACTCCACTCCAGCCTGAAGGACAGGGTCAGGGTATACATAGGGACGCAGGAG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 32-1136 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000008.1 Thermococcus sp. GR7 NODE_8_length_86559_cov_64.547575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32 30 100.0 37 .............................. TGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 99 30 100.0 38 .............................. ACCTCGACGAGGTAGTCGTACAACTCCATCAGCTTGCG 167 30 100.0 38 .............................. TTGGCTCTGCTGGGGGTGATCCCGTGATTTGGGTCCGA 235 30 100.0 37 .............................. AATTCACAAGCAGTGATACTAGCTTATTGGTTATCCA 302 30 100.0 36 .............................. CGTGGCAGGTGGCGGTATAGCCATGCGGCGAAGGTG 368 30 100.0 38 .............................. CACTATAGTGTCATCGAGCGCAATATAATCCTTCCAAA 436 30 100.0 35 .............................. GTCGTCAATCTCGGATACCCCGTCGTGCTGTTGAA 501 30 100.0 38 .............................. CTCAGCCGTAGCCCCGTAGTTCGTGCCGTCCAGCTCCT 569 30 100.0 36 .............................. ACAAACACCCATACACGTGGCGACCACTGGGTGTAC 635 30 100.0 38 .............................. TGCTTCAACCACGTGATGATTTTCCTAGCAGCCAGCCT 703 30 100.0 37 .............................. TTAAGAGGAACTCATGAGACTCCCTCCAGACCTCCAG 770 30 100.0 38 .............................. AGGGGTTTTTGATGTGCAGCGTAACAGCTGCAACCTGT 838 30 100.0 37 .............................. GATATGGGAAAAAGAAGAGCCGATAAACAAGGTTGGG 905 30 100.0 38 .............................. TCTTTACGACCTCGACCCTGTCATAAAGTATCCGAACC 973 30 96.7 37 .............................T GTCACCCCCTCTGTGCTAAACAAGTATTCAAAATACA 1040 30 100.0 37 .............................. ACAATTAAAGGTAGTAGGACGGGACACTCTTTTTAAT 1107 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.6 37 GTTTCAATAAGACTCTAAGAGAATTGAAAG # Left flank : AGCCGAGTAAATAATCCTCTGCGAGATGTAGG # Right flank : TAACGATGATGACGGACTGCTCGAGGTTTTCGCGAGGTAGTTTCAACAAGAAATAAGAAACCAAAAAGTGAAAAGTGCTTTTACTCCATCCTCCTTCCGAGCAAGCGGTTTATTCTCGCCCTTATGCCTCTGTTGCCCTTCACAAGCATAACTGTCTTCGGGCATTTGCTCGCTACCCTTTCAGGCACTTCCCCAAAGAGTAGCCTCTTGAAAAGGCCCTCCCTCGTTGCCCCCATGACCACGAGGTCGTGCTTCCTGCACTCATCAAGTATCGCATTTACCGCGTCGCTTTTGTTCACTATCTTCAGCTCCGCGTTTTCGATCCTCTCCATTACCGGCTTCAACTGTGCCCTTACCTTCTCTTCCAGCTTGCCGGTGGTGTTGACGCTGAGCACAGTAACTCTTGCACCGTACGCATCGGCGAGGATCGAGACGAGCTCCGCACTGATGGCGCTATGCTTTCCTCCCCTCGTCGGAAAGAGAATGCTCTTAATTTCTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 84912-86529 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUL01000008.1 Thermococcus sp. GR7 NODE_8_length_86559_cov_64.547575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 84912 29 100.0 37 ............................. ACCGGCTTCTTTGCACCGTGTTTTTTAGTATGTAAGT 84978 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 85042 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 85106 29 100.0 37 ............................. CTTTTACCTCGAGGAGCATGGAGAGGGTTACTAAAAT 85172 29 100.0 38 ............................. CATGATTTTTCCCTTCACTAAGATTACTTCGTGCCTGA 85239 29 100.0 37 ............................. CTTTGCATCTGCATCAAAATCACCAACACTTCTAAGA 85305 29 100.0 39 ............................. CAGATGTAGGGCTGGTAAGGGCTCCAAACCTAAACGCAT 85373 29 100.0 37 ............................. CAGGAATGCCAGTGCAGTTATCACTCCAACAAGCTCT 85439 29 100.0 37 ............................. TTCATCCGGCAGCTCGACGAAGAGTCAGCGAGGTTGG 85505 29 100.0 38 ............................. TCAATGGCTCCTATGAGTCTGGTTGCAGTGAGGTACTC 85572 29 100.0 37 ............................. AAGCAAAGAGGCTTATCAGTGCTGTGAGATTTGAGTC 85638 29 100.0 36 ............................. CTTACCTCAACGCGACGCTCTTCTGCCCGCTCGACG 85703 29 100.0 36 ............................. TCCGGTCTCGAAGTCATAGCGGCCTCTGCAACGCTC 85768 29 100.0 38 ............................. TTTCCCCAGCTGTTGTGATGCCGGTCGTCTCCTTCTGA 85835 29 100.0 40 ............................. TCATGGGCAACGTTGATGAAGCGATGAGGGAAAAGCTTGC 85904 29 100.0 37 ............................. TGACTCCAGGCTCATTCGGCTTTGGGACTTCAATGCC 85970 29 100.0 37 ............................. TGGTTGTACATGGTCTGAGTATAGGCCTGTGCGATGA 86036 29 100.0 38 ............................. CTGAAACATCTTTAGCCATCTCCTTAAGCTCTTCTGGA 86103 29 100.0 37 ............................. CTGGGAGTTTGCTGAGGAAGAGCCTGGCTTTGACCTC 86169 29 100.0 36 ............................. CGTTTCTGAAGTGTCGGGCCAATACGCAAAAATCCA 86234 29 100.0 38 ............................. ACATCTGGAACAACCTGCCAGTGCTTGGTCTTGTCGGC 86301 29 100.0 37 ............................. TGACAGTGTATTGGTCTATGTTTGTTGGATCGAGAGT 86367 29 100.0 38 ............................. ATCGGCTTTGGCCGAAAGAGATTTTTCCAGCTCTTTCT 86434 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 86501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 25 29 100.0 37 GTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : AGAAGTGAAAGATTGTCGCCCCGAAATTATGCTCTATCATGTTCTATGTTCCGTTTTTGGCGCTTTGAGGGTTTTACAGGGACTACATCCCCGGAAAAAGGCAGACAACCCCGTGGAATTCAGAAAGCACTACTTACAAAACATAACAAGAAGTTACATTAGATACCATATAGTGTAACCAATTTCCGGGCGGAATGTCAATCAAGCCCGCTCGGCGGCCGAAAAGTATCGATCCCCGATATAATTGAACGTTTTTGACAATCTTGCCGCATTCGGGCAGACACTCCAAAATACGGGCCGCTTCGGGCTCTGGAACTCTCATGCACTGCAAAGTACATTGAGAATTTCGGCCCCAGAGAAAAGGCACCCACCCCAGAAAAGGCCGGAAAAGCGGCAGATTCCAGGGCTTTCAGGGGTCCCCCAGTAGGGCTTTCCAGAAACACTTAAATATCCGGGGTTACAGAGGATTCTGTTGGAAAAACAGGGTGAAAAAGTGTCCT # Right flank : TCATAGTAGGTGTATCCACCGAAGATGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //