Array 1 46964-45873 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CEDZ01000056.1 Streptococcus suis strain LS3E, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     46963	    32	 100.0	    34	................................	TCCAAAAGAGGATGAAACGCATGGCAATGCACGT  	
     46897	    32	 100.0	    34	................................	CGCATCATAGGCTCAATAACCACCTCAATCAACT  	
     46831	    32	 100.0	    33	................................	ATCAAATTTTTGAAGCAATTGCCCCTTAATATC   	
     46766	    32	 100.0	    36	................................	TCACTTTGAAGATAAATCACATCATCACTAGCAAAC	
     46698	    32	 100.0	    33	................................	CAGCCATGTGATAAGGGATTTTCCCAGCCTTCA   	
     46633	    32	 100.0	    34	................................	TCCCAAATTTGGGAAAAAGTACGGGAGGTCGCCA  	
     46567	    32	 100.0	    35	................................	TTTGAGATTGCTAGGTTCGCATCTATTCTCAGACC 	
     46500	    32	 100.0	    33	................................	TATTGGACCAAGGAATGGCGAATCATTCGAAAG   	
     46435	    32	 100.0	    33	................................	AAAAGCCAGGTTTATTAAAAAATCATTTGACAT   	
     46370	    32	 100.0	    35	................................	AGACAAGGCCACGCGCTCGCCTACCGCGTCGGCTG 	
     46303	    32	 100.0	    35	................................	AAGTATGGACGAGCAAATGCCACCTGGGTTCCGCG 	
     46236	    32	 100.0	    33	................................	CGAGAGAACTTGCGGTGACAAACAAGCTTATAC   	
     46171	    32	 100.0	    36	................................	ATCTTTTTCGTTGGCTAACATTCTAGCCTTCAAAGC	
     46103	    32	 100.0	    34	................................	GATTTGAGCTTTTGAAAGTCATCTTGACCATAAA  	
     46037	    32	 100.0	    36	................................	CCCTCGAAGAATGTTTATACGTCTCAGAAGCAACTC	
     45969	    32	 100.0	    33	................................	AGGGCATTGAGCTGTTCTTGGGTCAATGCTTGG   	
     45904	    32	  71.9	     0	.......T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        17	    32	  98.3	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAATAAAGAATAAGTTGCTGGAAATCATTGATAAGGAACAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACAAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGATATATTCCATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT
# Right flank :  TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATAACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAGTATGTGGACCTGACGGTAGATGGGGCTGACGAGGTGGATGGTGCCTTCAATGGTATAAAGGGTGGCGGTGCTGCACTGCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT

# Questionable array : NO	 Score: 9.17
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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