Array 1 24021-24240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTQ010000011.1 Listeria innocua strain FSL L7-1743 NODE_11_length_34351_cov_89.470502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 24021 29 100.0 34 ............................. TGTTCTATTCTATTTACTATAATAAGAACACCTT 24084 29 100.0 35 ............................. ACGTGCGTGGCTCACTATGCAAAAGATCGATCAAC 24148 29 96.6 35 ..............A.............. ACAATAATTTTTCTCTTTTTATCCATTTTTCCGCG 24212 29 72.4 0 T...........C.CCA......AA..G. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 92.2 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAAAAACCGAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCCGAGTTTGGAAATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTAAGGTAAGATGGGAGTGAGAAGAAAAGCGCACGG # Right flank : TCCAATGTGTAATTTTTGCTCACATTTAAAAATTACAGTTTTAAATTAACTCCCTAAAAAATGCCTTTAACAACCATTGACATTTACCAACTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 9826-8622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTQ010000020.1 Listeria innocua strain FSL L7-1743 NODE_20_length_10961_cov_143.496968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 9825 36 100.0 30 .................................... GATTGTTACCTTTATTATCTATACTATTAG 9759 36 100.0 30 .................................... CCAAAAATGGTCTCTATGCTTAGATTAACC 9693 36 100.0 30 .................................... GAATTTTTTTTGCCAGTATCGAAACCATTT 9627 36 100.0 31 .................................... AAATCGCCGGAGCTAAAATATATCAACAGTA 9560 36 100.0 30 .................................... TATCCCTTCTGAAGCTAGTACGGAGGTGTT 9494 36 100.0 30 .................................... GCTTCTACGAGACTAACGACATGCGTGTGA 9428 36 100.0 30 .................................... TCAGTTTGCAAAAGATTTTTTGGAGTATAT 9362 36 100.0 30 .................................... TCCTACATTTTCCCAGAAAAACGTCCAAAT 9296 36 97.2 30 .....................A.............. CATAGGAACAAACAAAATATTGGTGGCTGA 9230 36 94.4 30 .............................A....G. AGAACTATTGCTTCAGTTATAATAGATATT 9164 36 91.7 34 ................T............A.....T GAAAAGAAAGTTGGATGTTTCACTTGATGTTATT AT [9147] 9092 36 80.6 27 .......G...G...............A.G...GCT ACCTTTAAAGGCTTCGATGATTAAAGC A,G [9058,9067] 9027 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 8962 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC TT,T [8937,8944] 8895 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 8722 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 8657 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 17 36 94.9 37 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : TAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAATA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.59, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 348151-348977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTQ010000003.1 Listeria innocua strain FSL L7-1743 NODE_3_length_354383_cov_116.626213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 348151 36 100.0 30 .................................... GCCTGTTCCCTCATCTTACGTAAATCTATA 348217 36 100.0 30 .................................... TTGTGGGGCTATTATATGGCATGGTTGCAA 348283 36 100.0 30 .................................... ATTGTTTTTATTTTCCGGCTTATTGAAAGC 348349 36 100.0 30 .................................... GCTCCAGAACTTTGTTATCCGCTTCTATTA 348415 36 100.0 30 .................................... ACGTGAAACTTCCACAAGTTCTTCATGTGT 348481 36 100.0 30 .................................... TGTTGCGTAGAGATTTGTTATATACCGGCG 348547 36 100.0 30 .................................... TGCTTTTTTCTTTCCTCCAATTGCACTTCC 348613 36 100.0 30 .................................... CAAGGACCAGAAAGAAACATTGCTTTACAT 348679 36 100.0 30 .................................... AACTGTTTTCTTAGCTGCATCTGTTGCCCC 348745 36 100.0 30 .................................... GATAAAAGCATTGAAAAAAAGGTTGAAAAC 348811 36 97.2 30 ................C................... TAGTGAAAAAAGTAAAAGGTAGGCGTTATG 348877 36 97.2 30 .......................G............ AGAGAGGGTGAACTCTAAATAATCGGAAAT 348943 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CTATCTCTCAATCCACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 10481-10911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTQ010000018.1 Listeria innocua strain FSL L7-1743 NODE_18_length_12243_cov_205.438106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 10481 26 76.9 40 ..C...TG.G.A..T........... CCCATTGGCTGGACTTGTGAAGCTAACGACCTTGGAATTT 10547 26 100.0 40 .......................... CCTATTGGCTGGACTTCCTGACCTAGGGAGCTTGAAATTT 10613 26 100.0 46 .......................... TCCATTAGCTGCACTACCAAGGCCAAAGCTAGGGACCTTGGAATTT 10685 26 100.0 40 .......................... TCCATTAGCTGGACTATCAAGAATACAGTGGGTGGAGTTG 10751 26 80.8 43 ...........A..T.....CA..C. TCCGATAGTTAGCAATAGTAATCGTATGGCTGCATTGCATCTA 10820 26 84.6 39 ..C...........T.....CA.... TTCACTATCAGGTAAAACGCAATATAGAATTGTGAACCT 10886 26 80.8 0 GC..GC................C... | ========== ====== ====== ====== ========================== ============================================== ================== 7 26 89.0 42 AATAATAATCAGATAAGTGATCTCAG # Left flank : GTATGCTGGTTTTAGCAGATGAAGTGAATGCTGGTGATGCAACAGAGGTAACAGTAGGAGAAGAGGCACCTCCTCTTTCAGAGGGATCTACTGAAAATGAGGTGGAAGGAGCAACAGAAGAAGATGGGACGTCTTCCTCTGAGGTTATAGTTTCGAATCAACAAGAAGAAAATATAACGGAGAATAATGAAACAAAGATTGATGAAGGGAAGATGGAAAGACCTAAGCGATACTGGGTATTTACAGGATCAAAAGCAATCAAGGATATATTTCCAGACCCTAAACTTGCAGCCGAGATAGCTAGGGTAAAGAATAAAACTGTTGATAGTGTAGTAACCCAAAATGAGTTGAGAATAGGGGTGCTTGACTTAAATGGTAAGGGAATTACAAATCTTAGTGGTATTGAATATATGCTAGCGCTTGACAGGATTAATATAAGTAATCTTTCAGTTGATATCAGTCCATTAAGTGCCGTAGAAACTTTGACAGCCATCACAGCG # Right flank : GCCCATTAAATGCTCTTAGAGAATCCAGTACTATCAGTGGCTACAATATAGATTTAACTGGTCAAAGGATTAGACTGCCAACAAAAAAATGGTCTAATCTAATAAATACGCCCAATATTGTAAAGGGTTTTAATGGTAATTTGTATGGCTCTATTAACATCTCTAATGAAGGACGACACGAAGACGGGGAAGTGAAATGGACAGGACTGCTTAATGTGAATCAAGAGGTGACTTATTCATGGAACTTCACCGATCATATTCCGAGTACTGGTACCATGGCCTTTACTGGAGTTGTTACCTTAGGTATAGATCCTCTTGAGGTGAAGATACTAGTAGATACCGATGGGAATAGTCAAACGACGAGTGACCAAACACTATTCGCAGAAGAATCGGATGCTAACTGGAATTCTTTGGAAGATATGTATACTTACGTAAAAGAGCAGTTAAATGGAACAGACTATGGGTTGTTAAGTGTTGAACAGGATAGCGATGATAATTAT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAATAATCAGATAAGTGATCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //