Array 1 1-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKY01000021.1 Enterococcus phoeniculicola strain DSM 14726 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 22 61.1 30 --------------...................... GGAAACATCTATGAGAATCCTGAACTCATA 53 36 100.0 30 .................................... CGGAAAACAAAAGGAAGAGTCTGAAGGCGG 119 36 94.4 0 .............................T.....A | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 85.2 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : | # Right flank : ACAACGTTTCATCACTAACGCTTACAAAAAATTATTTTAATAAATTAAAGGTATATCAATTTTCCTGAGGGGGTAAGCTATGAGAAAATTATTAATAACAGGTGGTACAGTATTTGTTAGTCGTTCTTTAGCAGAATATTTTGTTGCTAAAGGAGATGAAGTTTATGTTTTAAATAGGAATAATCGAGTACAGTCTGAAGGGGTTCACCTGATTGAAGCGGATCGTTATCAGTTAGGAGATGTCTTGTCGGAAAAGGTATTTGATGTGGTTATAGATGCAAATAGCTACACAAAAGAAGAAGTTTCTCTATTGGTGGATGCATTACCTTCTATAAAGGACTATATTTTTATTAGTACTAGTGCAGTTTATCCTGAAACCTTGTCCCAGCCTTTTTTAGAAACACAGTCTACCGGAGAAAATCATTATTGGAAATCCTATGGAACAAATAAAATAGAGGCAGAAGAATATTTAGAAACCCATGTTCCACAAGCTTATATTT # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.26, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 129223-128649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKY01000001.1 Enterococcus phoeniculicola strain DSM 14726 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 129222 33 97.0 36 ...........C..................... TTCCATGGAAGGATTTAAATTAATAGGGTCTACTAC 129153 33 97.0 33 ...........C..................... AAATATTAACATTGCAGAAGAAAGAGAAATTCG 129087 33 97.0 33 ...........C..................... TCCTGATTATATAAATGCTTTAAATAAAATAGA 129021 33 100.0 35 ................................. AATCACTTGCTCGTTATTATCTGGGGATACAGTGA 128953 33 100.0 34 ................................. GCTTTAAATGGACAGTTGACTATGATGGTCGTAG 128886 33 100.0 36 ................................. ATGTGATTGCGGCAGAAAATATAGGGAGGTGGACAC 128817 33 97.0 36 ..................T.............. TACTGCATTGATTGTTTGTCTTGTCACATTGACAGC 128748 33 93.9 34 .........C...C................... ATCAACAGTTAATCCGTACATGTTGATGATTGAT 128681 33 81.8 0 .........C..............T..GCT.C. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 96.0 35 GTCTTGCCCTTTATAGGGCAAGTGGATTGAAAT # Left flank : ATTGAAGAGTTATTGAGTAATCCAGGGATTATTCGTCATCCGTTGAAAGTAAAGGCAGCAATCAATAACGCACAGAAATTCTTGGCTATTCAAGAAGAATTTGGCAGCTTTGATACCTATATTTGGGGATTTGTTGATGGTCAGCCTATTATGAATCACTGGAAGGAAATGAGCGAAGTTCCAGGAACCACAAAGCTATCTGAAAAAATCAGTAAAGAATTAAAAAAACGAGGCTTTAAATTTTTAGGAAGTACAACGGTTTATGCATTTATGCAATCAATTGGGATGGTCAATGATCATGTGGAAGACTGTTTCTGCAAATACTCAACAAAATAAATAAGGTGCGGATGTGAAGTGGACATGAAATCCCCGGGACATCCGCACCATTTTTTGCGTGAAAAGAGAGGGGAAAACCCTCTTTTTCTCATACATATTTAATGTTATACTAAATGAAAGACGAAAAAGGGAAAATGCGTTCGTGTAACAGCCCTGTTTTCGCC # Right flank : GTTTATTTATTGAAAAGAATGGAATTTTGTGAGCGTTCATCAAAATTCCATTCTTTTTTTGATAGTTATTTCTTTTTTGTTTGATAGTGTTCATAGCGAGCAATCCAATCAGCTGGGCTCATTTTTTTCGCGAGTTCTCCCATTAACTCATAAGGGATTGTCTTTGGATTAGTGAAGCGAATACAGCTTTTTCCCATATTTAGCTTTGTGGGTACCTGTTTTTTATATTCTTCTTCAAACCATGAGAGTAGAGAAGGATTGCTCATGATTCCCATGTGATACACAGCGAAATGATTCTTTTGTGCGCCAAGAGAAAGAAAAGGTAAAGGCTCATCTGGTCTATTTAAATAACCGTTTGGATAAGCACTTAGAGGGACAACAAAAGTAGGCATCCCATATTGCAACACAAACTGAAATCCTTCGGGGAGGTTGGTAAGAAGCTGTTCTTTTAGTAAAAAGTAGCTTGATTGCCATTTCTCCGGTAAATTCGCTTCGTATTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGCCCTTTATAGGGCAAGTGGATTGAAAT # Alternate repeat : GTCTTGCCCTTCATAGGGCAAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1871-2104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKY01000050.1 Enterococcus phoeniculicola strain DSM 14726 Scaffold50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1871 36 100.0 30 .................................... AAAAGATATTGATTTGAGATATACTAATTC 1937 36 100.0 30 .................................... TGTTTTAGTTTTTCATATTCGTCCATTCCT 2003 36 100.0 30 .................................... AGAAATAATGCCTGTATGACCATAATTGCC 2069 36 75.0 0 .........................A.C.AGCGCTT | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : AGAAAATCCTGAAATGTATCAGAATATTGTTGTATCAGATAATCTGATTACTTATGAAGTTCATCCTGAGGGTGAGTATTTTATTCGATTGGTAGACGCAGATACGATTGAACTAGTAAATAAAGAAAAAGAGAATGAATATGTTTTAGGTATCTACAATAGAAAATAAGGGTTGTGAAATATCTGTTGTGTTAGAGAGTCTTTGTTCCGGCTAGTAATGAATAAACAAGAAATAAACGATACTCAAAAAATGAATGGAGACTATCCACACAAGCTAAATGTACATTTAGCTGTGTGAATACGATACGATGTATCCCACATGATATATAGAAAGAATAGTTATAAGAAGATAAACCATGTTATAATAAATAAGGAGTGAATTCAAATAGCTTATTGAAAATTTTATAATAAATAGAAATGAGAAGCATTCAAAGCTGAAGTCTTGCTATGGACAAATGGCGCGATTACGAGATTTCGCAGGGAAAGAAAATGACTGCGAG # Right flank : TGTTACATTTAAAGGCTACTAGAATCCCGGAAATGAAAGCGTGTTCTTTTTCGTGGCGGAAGTGAGTGAAATCCACATCTTGCTTATTTTTACTGTATAAAATGGGATAAAAGAGTAGGTTTCTGACCCGTTAAAGGTGAAAAAGTAGGATAATATGGAAGGAAATCTTTCGTATTTAAACGCGTATGATATAATAAGTTATATATTTCTACTGTTTTATTTATAAAACGCAACAAAAAAAGCACCGAATCAGTGCTCTATAATTGGGTACGGACAAAGCCTTATTTTAACTCGCTATGTTGAATTGAATACTACCAATAAATTCATTATAGCATGGAAATCGAAATATTCAATTGTTTAATAAAAGATTATGAATAAAAAAATGAATAAAGGAGTTTGGTGATGAAAAAAGAGTATACGATTGGTTTAGATATTGGAACAAATTCCGTTGGATGGGCCGTATTGACTGAAAATTATGATCTTGTCAAAAAAAAGATGAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 14441-13955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKY01000018.1 Enterococcus phoeniculicola strain DSM 14726 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 14440 36 100.0 30 .................................... AATTTTTGCATTCGAACCTGTTGGATCCTT 14374 36 100.0 30 .................................... GAGTGCAAGCTGAAGACAGTCATTCTGATT 14308 36 100.0 30 .................................... ACTAAACACTGACGAGCTTTTATACATTGA 14242 36 100.0 81 .................................... TATTAAGCTGGAATTTTGTACAGTGATANTTGAATTGAATGCTTCCAAAACACTAAACACTGACGAGCTTTTATACATTGA 14125 36 100.0 30 .................................... TATTAAGCTGGAATTTTGTACAGTGATAGA 14059 36 100.0 30 .................................... GACATTATCAATTTCTGTTTCGCTCATTTG 13993 36 88.9 0 .................G.......AT.....T... | TG,T [13958,13964] ========== ====== ====== ====== ==================================== ================================================================================= ================== 7 36 98.4 39 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : CGGAAGAAAAAATGGCTGCAGGAAGAGCAGCATTAGTAGAGGCGCATAATACTCAGACTGGACTCTTGGTGGAAGAAGCAAGTGGAAATCATGCCACGATTACGTTACTTATGGTTCATAGTCAGGATCACCTGATGAATGCCATCTCTTATTTGGATTTAACGCAGGAATTAATTGATATTCACAAAAGACTATCTGAATAGAGACGAATTTTCATAGAAGAGACTGGATTCATAGAACAAGAAAGATGTCGGAACAAACACCTCTGAGGGCGAAATCCTCATGAGTGTTTGTCTCGACATCTTGTTTAGGTTTCTGGGAGATAAGAGAAGAAACTACTTCGTTATGGACATAATCATGGTATAATTGATGGGAAGTATATGGGAAATGTTCCTTGATAATCACATATTCAAGATAATATGAAGTATTCAAAACTGAAGTCTTGCTATGGACAAATGGCGCGATTACGGGATTTCGCAGAGAAAGAAAATGGCTGCGAG # Right flank : TAAGTTATCATTGTCAATAGATTCTGTGAATAGAAATTAAACAGTCTAGGATAGTTTAGGTAGTTATTGTTCACTGAGAACGTATAGAATTTCTTGAATATGCCCATATTGATGTCAATTTCATGGTTCTTTCTCTAAACTTACGAGATGAAACTGTAGACTTAACTTGATAGTCTTAAATGAGAGAGAGAATTATTCCACTTATTTGAAAACGTTTCCTTTTTTGTAGATGATTTTAAAGGTGATTACTTATGTCAATTAATTCAAAGAAAGCAATATTTCTCAGTGGATGGATATTCATATATTCCCTACTGTATTCTTCAACTGTATTCTTCCGTTTTGATAGTGATGTTATCAAACTTCTATTTGTAATATTCGGTTTTTTTCTATTTAGAAAAGATATATTCAAGCAAACTAAAAACACGAATCACATTAGATTAGGGTTTATTTCTGTTATTTCAGCAATTATTATCTTCATAGTTGTCTATTTATTTTATAAA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.82, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //