Array 1 20238-16255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIYB010000108.1 Myxococcus vastator strain AM301 NODE_108_length_20299_cov_10.1931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 20237 36 100.0 35 .................................... GTCCCGCTGCATGATGTTGAGGTGGGTCCTCCCTT 20166 36 100.0 37 .................................... GCGTAGATGTCCCCAGGCCCACAGCGGACGAGCACGG 20093 36 100.0 36 .................................... TTGAGCCGGGCCCGGACTCGCGGGTCCTCGACGTGG 20021 36 100.0 36 .................................... AGCGAGAGAAGGTGGAGTCCGCCCTCTCCCGCCTCG 19949 36 100.0 36 .................................... TATGTGGGATGGCAGGACTGCGAGACGGGCGCTCCA 19877 36 100.0 36 .................................... GACTCGGTAGGCATGGCGCAGTTCCGCAGCGGCGCG 19805 36 100.0 35 .................................... CGTCCCGGTCCGCCTTGTACTCGTCGCGGCAGGCG 19734 36 100.0 38 .................................... ATTACGCAGTTGGGCAATCTCCGCTTCAAGTTCAGCAA 19660 36 100.0 37 .................................... AGGTCTGCCCCATTCATAGAGGGGAGGGGTTACGTAT 19587 36 100.0 36 .................................... TCCGTGGCACCTGACAGATTCACCATGTCTTGCGCG 19515 36 100.0 38 .................................... TACGACTCCAACCGCTTAGACCGGGCTCTGGCACCCAT 19441 36 100.0 37 .................................... GCGAACATCTTCGCGTCCGCCGGGAACTTCTCCTTCA 19368 36 100.0 38 .................................... GAACGCGAGGCAGCGGAGGCGGAAACCGCCATGCTGAA 19294 36 100.0 35 .................................... ATGGCCGCGAAGGACATCATCTTCGGCCAGACGAA 19223 36 100.0 34 .................................... CGGTAGTCCAGCTCCGCCCGCTTCGCCTGCCAGA 19153 36 100.0 34 .................................... TCGCCGCGCTTCTCGGCCGCGTCAGCGAGGTCGC 19083 36 100.0 38 .................................... TGCCGTTCAACCGCCGCGCGTGCGCCGCATACACGGGG 19009 36 100.0 37 .................................... TTGGGGTGGGCGTCCGACGCGGACAGGCTGCAGAGCG 18936 36 100.0 35 .................................... AGCTCGGCCCCGGCCTCGAGTGCCCCCAGGACGGC 18865 36 100.0 36 .................................... GGGTTGGGATTCTCCAGCACGCCGGAGCCCACGAGT 18793 36 100.0 34 .................................... CTACCGCCCACGCTCTCAATGAATTTCCCCAAGT 18723 36 100.0 35 .................................... TCACGTCTTGAGTCTGTACCCTCTCAGGCCGCATA 18652 36 100.0 34 .................................... TGTCCACCGAACTCCGGTGCCTGTACTGCCGCCA 18582 36 100.0 34 .................................... ATGCCCCCGAACACGGTGTTCGGGGGCGGATTCG 18512 36 97.2 34 .............C...................... ACGCCCTTCTCAAGCTCCGCCGTGGACTCGACGT 18442 36 100.0 33 .................................... GATAGTGGGCACGACGGCGTGCAGGTCTGGGTG 18373 36 97.2 37 .C.................................. ACGGCGTAGCGGGCCATGGTGGACTCGTCCTCGGGTT 18300 36 100.0 40 .................................... GGGTGTAAATCCGCCGCTGGTCCGCGCGTGTCCGCCCCAG 18224 36 100.0 32 .................................... TCCGCCTCCAGGTCGAGGCTGCCGTAAAGCTG 18156 36 100.0 35 .................................... ACGAACGCATTCGCCACCGGCGAGGGAACCACCAG 18085 36 100.0 35 .................................... TCCTCGTAGTTGATTTCGGTGAGCCCGATGGGGAT 18014 36 100.0 37 .................................... CTCTCGGCCAGGTCCTCCGCCGTAGAACCTGCATCAA 17941 36 100.0 39 .................................... GTTTCCCGGTACTGGGCAGGGGAGTGCGAGCGCGGGCTG 17866 36 100.0 36 .................................... GTCCCCGGGTCGCTCGACAGGTACCGGGCCACCTTG 17794 36 100.0 36 .................................... GCCTTCGCGCTGTCCGCTTCGTTGTAGTCCCCGCCC 17722 36 100.0 34 .................................... CCTTGCCGTCCTCGGGCACCAAGCCGAGCAGTTG 17652 36 100.0 34 .................................... GACGGAGGCATTCCGCGGCGTCATGGCGGACTTC 17582 36 100.0 36 .................................... ATCTTTGGATATGTTCGTTCGTGTCTCTCCTTGCGA 17510 36 100.0 36 .................................... ACTCCAGCTGTCACCACCGGCTTGTTGCCGGATGTC 17438 36 100.0 35 .................................... AAAGCCTTCTTATTCGCGATGGTCCAGGTCATTTG 17367 36 100.0 36 .................................... ACTTGGAGGACGCACCTGCATGGAGCCATTCAACGG 17295 36 100.0 35 .................................... GGTCCCAGTGCTTGGGTTCTCGCGGTAGCTTGAGT 17224 36 100.0 33 .................................... TGGAGCTGATCGGCCAGGGTGAGGGCCGGGCGG 17155 36 100.0 39 .................................... CCGCCGAGTTCACGGAAGGTCAGCTCGTAGGAGGACTTC 17080 36 100.0 35 .................................... CTTCAGCACTGCCATGTGTCCCGTCGGTGCCCAGT 17009 36 100.0 38 .................................... TCCACCATGGCCTTGTGCGTCTCGCTCTTGCTGCTGTA 16935 36 100.0 36 .................................... ACGAGAGGCCAGACGTCCACATCTCCGGGCTTCGGG 16863 36 100.0 37 .................................... GTGCGCATGCTCACGATGGACGCCCCCCTGCTTCCGT 16790 36 100.0 35 .................................... ATGAAGCGCCAGTTGGCCCGGTCGAAGGAGTATTC 16719 36 100.0 36 .................................... GGTTCAGCCTTAGCCACCTTGACGGGCTTGGCCTTA 16647 36 97.2 34 ................................T... CCCTTGAACTCGGTGGGGCGCAGTGGCTCGAAGC 16577 36 100.0 33 .................................... CTGCTTAGCGCCGCGTCCGCGTTGTCCTTCTCG 16508 36 100.0 37 .................................... CCCAGCGTGAAGAACTCCCGCCATTGGCAGTACCAGA 16435 36 100.0 37 .................................... ACGCTGTGACAGCGCTTCAGCAACAAGCGATACCACT 16362 36 100.0 36 .................................... ACGCGGTCAGCCTGCTGGATGCCTTGGGCCGCCGCA 16290 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 56 36 99.8 36 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CCGTGATGCCGGAAGGCGTTGAGCACTATGTGGGATGGCAGGACTGCGAGACGGGCGCTCC # Right flank : CACCCGACGGATGAAGTGAACTTGCTAAGGGCTCGCTCAGAAAATACCTGGCCGATTTCTACGCCCGGAGGCCGATTTTCCAAGGGTGGGAGCGCCTCTCTGGGCCAGGTAAATTGTGAGCGGGCCCTTGCCTCCGTGCTCCAATGTGCTACGAGCGACGTACCATCCTAGACACTACGTAGAACTGTGGGATCCATCCGCTCCGGAGGACTACCCACCCAGGGTGATAGACGCATAATATCTAGACGTGACTGATTTGCGCATCATGCCAAAGCCGAACACTGCTATTGGCCTATTGTGCCTCTTGTCCGCCGTGTCGCTGGGTTGCTCCAGCAGCGCCACCGGCGCGGCCAGCCGTCGCGACGCATACACGCTGGCGTCCTGCACTGACACCGTGTCGTGCTGCGTCCAGCGCAATCCAGGCGCTCCCGAAGCGTGCGGCCTCACGGCTACAGAAGCCGCCATGTACATGACAGGCGTCAAGACGGCAATGGACGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1150-7055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIYB010000043.1 Myxococcus vastator strain AM301 NODE_43_length_31789_cov_8.9939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1150 36 100.0 36 .................................... GCGGGGCGTGGGCGCCAGGGGAAACGTAGAGCTCCA 1222 36 100.0 35 .................................... GAGTCCAACTCCGCCCCCACCAGCAGACCCACCAG 1293 36 100.0 35 .................................... ACGAGGGGGTCGACGATGTGAATCGCCCCCTGGAA 1364 36 100.0 36 .................................... AACGGCGCGCGGGAGATTCGCCTGCTCGCCAACGTG 1436 36 100.0 34 .................................... CACGACCCGTCCGAGCGGCGCGAGAGCCGGCTTC 1506 36 100.0 41 .................................... AACACCGAAATTCTTGTGATCGCGGTCGAAACTATTTGCGA 1583 36 100.0 36 .................................... TTCGGTATTGTTCTGGACCAGTACCACGTCGCCGTC 1655 36 100.0 35 .................................... CAATCCTGGCTACCACCGCCCGACATGAAACCCAG 1726 36 100.0 36 .................................... CTGAGAGTGTCCCTCTCAAGCCCCGGCACCCGCGCG 1798 36 100.0 35 .................................... ACCACGAAGAACGCCACCGTTACGGCGCTCCAGCG 1869 36 100.0 33 .................................... CGGCGCAGTTCCCGCCCAATCTCGCGTTTCTCC 1938 36 100.0 39 .................................... CGGCCCTCTCGGTCGTTCGTCTGCCACTCCTGCTCCCAC 2013 36 100.0 37 .................................... CTGGGAGGTTCGGACTTGGCCAGTCTCGTGGGCCTCT 2086 35 97.2 34 ...............-.................... ACGACAACCTGCGAGGGGCGCTGAAGTCGGTACG 2155 36 100.0 35 .................................... TCCCACACGGGACTGGCGAACTCGGCCCCGAGGTC 2226 36 100.0 33 .................................... TCATCAGCGCGGATGCGCAGCGAGTTCACGCTG 2295 36 100.0 40 .................................... CTCGCGGCCGGGAAGGCGGGGCCGTGAACGCGCCTCTCTG 2371 36 100.0 43 .................................... TGGCTGGCTTGCTGTCACGTCCCTGGGTGCGCTGGCACCGCGG 2450 36 100.0 36 .................................... AACCCAGGGAACACCTGTCGCACCCACCCCCGATTT 2522 36 100.0 36 .................................... CCCTGCACGGCAAGGCGTGAACCGTGCGCGAGAGCA 2594 36 100.0 34 .................................... TACACGGCGACGGTGAAGGCCCCGGGGAAGCCCG 2664 36 100.0 34 .................................... GACACTGGCGTCCCATCTTCGCCCCAGAAGAGCC 2734 36 100.0 34 .................................... GCATCCTGGACGTCTCGGATGCGGACATTGACTT 2804 36 100.0 34 .................................... TTCTACCCGAAGCAGTGCGAGGCCGTGGACTTGC 2874 36 100.0 35 .................................... TTGTTCTTGTCGCCGGGGACGATGACCTTGATGAA 2945 36 100.0 35 .................................... CTTTTGTCGCAGGATACGTCCCTTATGGGTCCCGA 3016 36 100.0 38 .................................... CGAAAGCCTGGTCACCTTCACGACCAAGACGGAGGCAG 3090 36 100.0 38 .................................... TCAATCCCCACGCCCGTCCCTCCTCGGAGTTGCTGCGA 3164 36 100.0 37 .................................... CGCTCCTGGAAGGTGAACCGGTCGGCCTCCGCCGGGA 3237 36 100.0 36 .................................... TAAAGGCGCCCAGCCACCGTCACCGGGCGGAGCACC 3309 36 100.0 38 .................................... CTCCTGGACGTCGGCTCCGTGGCGTTCATGGTCCTGGC 3383 36 100.0 36 .................................... AACCCCCAGAATTTCAACCGTGGCGGCGACCTTCGC 3455 36 100.0 36 .................................... CGCGGACGGCGCCACCACAATGGCTGAGCGCCTCGC 3527 36 100.0 36 .................................... CGAGCGACTACATCCGAGGCGCCCACCGAGGGAAGG 3599 36 100.0 34 .................................... ATCGTCTCCATGTTGGAGACGAAGCGGGCCGGGC 3669 36 100.0 34 .................................... GAACAGCTCGTGGCGGAGAACAAGCGGATGCGCG 3739 36 100.0 33 .................................... CTGCTCGACCTGGCCGGCCCGCTGCGCTCCGAG 3808 36 100.0 35 .................................... GAACCTACGGAACTCGGGAAGCGGATTCGGGCGCG 3879 36 100.0 38 .................................... GGACAGTGGAAGGTGGAAGGCATCGCGACAGAGGCCGT 3953 36 100.0 35 .................................... ACATGGACCTGCTCGACCTCGGCACTACGCCCCAA 4024 36 100.0 36 .................................... TTGCGGTCCTTGTGCGGCCGGAAGTGGATGTACTTC 4096 36 100.0 35 .................................... TTCGGCGTGTGCAACAACCCGCTGCCGCCCGTGCT 4167 36 100.0 40 .................................... GGAATCTTGCCCCTGTCATCGGTCTTTTCGGCTTCCGGCT 4243 36 100.0 37 .................................... TGGGCCACCAACAACTACCTGAAGCCTGCCCTGTGGA 4316 36 100.0 35 .................................... CCTTCCTCGGCGTCCTGGACGTCCCGTAGTCCTGA 4387 36 100.0 35 .................................... CCTCGCCCTGGCCGACCAGGACGCCGCCACGAGCG 4458 36 100.0 35 .................................... GTGGCCCCACCCGACTTGTCGTAGACGCCTGCGAC 4529 36 100.0 34 .................................... GTCCATATCTCCCGGGCTTTGGGTCGCGAGGATG 4599 36 100.0 35 .................................... ATGCCCTCCAGGGAGACCGCTTCGCGGCCCTCATC 4670 36 100.0 33 .................................... GGGTCTCGCTGCGTCTGCTCGGTCATGACGGTT 4739 36 100.0 36 .................................... TCAGTGATGACGGGGAAGACCATCCCCCATCCACTC 4811 36 100.0 34 .................................... GAAACTCCCATCGATATCAGCGGCATCAACAAGG 4881 36 100.0 35 .................................... GGGCGAACGTGCGGTGGTTCAGCAGCCTGGACACG 4952 36 100.0 35 .................................... TCGCGCCAGGGCGACTCACCCAGCGCGTCGCGGTC 5023 36 100.0 34 .................................... GGGATGCTTTACCGGCACCGGACTGACTCCGGGC 5093 36 100.0 39 .................................... GCGTGGAGCCTGTCCATCAGCGTCTCCATGGAATCCGTG 5168 36 100.0 36 .................................... CAGGAACTGAAGCGACTGGCGGAGGGGGCGACGCCG 5240 36 100.0 34 .................................... AGCACTTCCGCGCCAACCTCAACGCCCCATTCGA 5310 36 100.0 37 .................................... GGCAGCGAGGCGAAGAGGGCCAGCAGCCGCGCCTCCG 5383 36 100.0 37 .................................... CAGATGGCCTTCGGCGACCACGCGCAGATCGTCGCCA 5456 36 100.0 34 .................................... GAGCACGCCGTTGCCACCCTGGAGAGGAAGAGCG 5526 36 97.2 34 ...............G.................... CTCCAGCGCGTGGACGCGTGGAATGCTCCGCCGA 5596 36 100.0 35 .................................... CCGGGCAACCGCAGCGGGTGGGGCCTCGTCCTCGA 5667 36 100.0 35 .................................... GGCACCTGCGTGGACACGTCCACGGGGTAGCCCAG 5738 36 100.0 36 .................................... ACGCTGGGCTACGACGGCGGCGCGGGCGGCCCGGAG 5810 36 100.0 35 .................................... GTCCTGAATGCGGCGCAGAGAGTCCCGGCCGATGG 5881 36 97.2 36 ....................A............... ACGGCCTGGATTGTCGCCCAGGAGGAAATCTCCACG 5953 36 100.0 36 .................................... GACTTCTCGGTGGCCGTGGCCGTTCCGGAGCGCTTG 6025 36 100.0 36 .................................... TACTTCACGGCGTTGACCGAGCCGAGGAGGCACGCG 6097 36 100.0 32 .................................... TTCTTGCGCGTCTGCTCTCGCGCCTTCAGCGC 6165 36 100.0 35 .................................... TCCTTGTTGCGCCACACCAGGACGGGAGCCTTTGG 6236 36 97.2 33 ....................A............... GCGTCGCGCAGGCGCTGTCGCTGGTCCTCGCTG 6305 36 97.2 34 ...............G.................... TGGATATACGCCGCGCTCCCGGCCTTGTCCGCGC 6375 36 100.0 36 .................................... AGGAAGACGACGAACGTGAAGAACGCCGCGGCGACG 6447 36 100.0 35 .................................... AGCCAGCAGCCCGAGCACATCATGCAGTTTTTCGC 6518 36 100.0 34 .................................... CCGGAGTCGTCGGTCAGCACGAGCAACTTCGGGC 6588 36 100.0 38 .................................... TCCAAGGCGCCGGACAGGGCTTCGGACAGGGGGTTGAC 6662 36 100.0 36 .................................... ATGGCCGGAGCCAGCGCGCCCTTCGGCACTTCTACC 6734 36 100.0 34 .................................... GTGTCTCCTGTGGGTTGACTACATCGCCCGAAGG 6804 36 100.0 38 .................................... TCGACGCGCGGTTCGATACCGCACTCGAAATCGAGCAG 6878 36 100.0 37 .................................... AGGGCAGGTTCAACCGGTTCACGGCCTCCGCCACCAT 6951 36 100.0 33 .................................... GGTGGACCTACCGAGTGCTTGACGCTCAGTTCT 7020 36 91.7 0 ...................G............TT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 83 36 99.7 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCCCGGCGGTGGCGGAAGGTGTATGCGCTGCTGAAGGGATATGGGGAGTGGTTGCAGCTCTCCGTGTTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGACTGTGCGGCGGGTGCGTGGAGCGCGTGCGTGCCATCAACGCGACGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAAGCAGGCGACGATCAAGCACCTCGCCGTGGCGGAGGCCCGCGACGGCGAAAACGGCGGATTCCCCTGTCGCTTCAAGAGGTTGAGGCTCTTTGACAGGTGAATAGGTGCGTGATCGATGAAAAGCCGAGTAGTTTCATGGGGTTGGCGATCCTGGGTAGGGGCTGTTCCGTCCTACCTTGAGGAAGGAGAGGTAGGTGCTTGAAAAGGGGATTGTAAGGTGCCGGAATTACTGAGAGATTCAGGCGGGCG # Right flank : CCCTATCTGAGGACCTTCATTGCGGCCTGGACGAGCCATGAGTGCAGCGCCTCGCCTTCAACTTTGACGGGCGCGTTCTCGTGGCCCATATCAATCCAGGAGGCCTGGGCCGCCTGTAATCCGGAGGCACCGCGGAGATCTGCCCCAGAAAGCCGCGCGCCATGAAGGACCGCGCCCTCCAGTTGCGCATCTTGGAGATTGGCCGACGTGAGGTTGGCGCTGACCAGGTAGGCGCCGCGAAGGTCTGCGCCTTGAAGATCCGCACCTTGTAGATTTGCTTCGCCGAAGCTGGCTCGAAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGCACCGCATAGTCCAGGTTGGCCTTCGAGAGCTGCGCCCTGAAGAGGCTGGCATTGATGAAAGTTGCGGACGCAAGGTTGGCGTGGGCGAGCGTCGTCATGTCCAGGATGCATCCATCCAGGCGTGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGATAGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9304-18411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIYB010000095.1 Myxococcus vastator strain AM301 NODE_95_length_21517_cov_8.31795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9304 37 100.0 33 ..................................... CTCTCGGACGCGCGCGCGAAGCGCAACATCCAG 9374 37 100.0 33 ..................................... ACGCCTCCGGACCTCTCCCGAGACGCGGAACTG 9444 37 100.0 32 ..................................... TTACGTGACTGCCCTCGGGATGGAGGGTCCCT 9513 37 100.0 34 ..................................... CGCTACCTCGCCTGTGTGGCCAAGGTGGCAGAGG 9584 37 100.0 34 ..................................... AAAAAGGAAGCCCCGAGTCATCGTAGTTGCCGCT 9655 37 100.0 36 ..................................... CCTGTGGTGTTGGAACTCGGAGGAGACAGCCAGGAA 9728 37 100.0 34 ..................................... CGCCAAAGCCCGAGCACGAGCCGAGCAAGTGCGT 9799 37 100.0 35 ..................................... GTGTGGTACTCGTTGTGAAGAAAGCGAGGAAGCAC 9871 37 100.0 33 ..................................... GGCTTGCAGGTGTTCAAGGGGACCTCCTCAGAA 9941 37 100.0 35 ..................................... GGTGTGGGGCTCCTTGGGCGGATAGCCGAGGTGGG 10013 37 100.0 33 ..................................... TGTGCCTCCATGGCCGACGTCTTTGACGCGGAC 10083 37 100.0 35 ..................................... CAGGGACTCAGCAGCGAAGACAGGGCAGCCGTGAA 10155 37 100.0 33 ..................................... CCGCCGTCCCCGAGCAGGTGGACCCGGCGACGG 10225 37 100.0 34 ..................................... ACCTCGTGGGACTTGGGCCGGGCTGACAGCACCT 10296 37 100.0 37 ..................................... ATGCAGGCCGCCGCGCCGCTCGGCCAGCAGGTGCAAG 10370 37 100.0 35 ..................................... AGCTTCATGAAAATCATTGACCCCGGCGTTGCCGT 10442 37 100.0 32 ..................................... TGGGCCGGGCGCTGGCTGCAGGGAAGACGGGC 10511 37 100.0 32 ..................................... CAGCAGGTGCTCAGCCCCTACATGGGGATGAT 10580 37 100.0 33 ..................................... TCGTCCGCCAGCACCGCGCCGTGGATGGCCACG 10650 37 100.0 35 ..................................... CCCTTGAACTTCGCCGCCGCGATGAAGGGGTTGCC 10722 37 100.0 33 ..................................... GGTTCCCTGGCGTTGAGGGCGTGACGACCTGCA 10792 37 100.0 32 ..................................... TCTCTCGGGTGCTTCGAGTGGGGTGCTGCGTG 10861 37 100.0 38 ..................................... CGTTCCCCGGCAAGTACGACTCCGACGAATTCGAGGCG 10936 37 100.0 34 ..................................... TCCTCTCGTGCTGCGGGTGAGACATGGGACGGGC 11007 37 100.0 35 ..................................... AGGGAGTCAGCGGCGGGAAGGCGTCACAGCGCGGG 11079 37 100.0 36 ..................................... GAGAATGACACCGACGTCGTCAACGCGGATGGAATG 11152 37 100.0 34 ..................................... AAGGTGAAGGCCGTGCGCCATGCCGGGGACACGC 11223 37 100.0 33 ..................................... CCATTCTGGATGGACGCCTCCAGGCCCAGCGTC 11293 37 100.0 36 ..................................... TCGTCAATGAGCGCCCGGGCTTCCCCGCTGACGTGG 11366 37 100.0 36 ..................................... TTCCTTTGCTTGCGCGGGCCGGGGGTTACGCCATGG 11439 37 100.0 32 ..................................... GAGACGGGGAACCGAAGTCAGTGGTCGAAGAC 11508 37 100.0 32 ..................................... GCCACGTCGCCGCGCATCTCCGCGAGCAGGTC 11577 37 100.0 33 ..................................... AGCTCTGGGTGTGCAGTGACGACGCGCGCCACT 11647 37 100.0 35 ..................................... ACCGCGTACCCATCCAGGATGTCGTGCCAGACCAG 11719 37 100.0 33 ..................................... TCGTTCGCCATGGCGTACCCCCTGCGTCATGCG 11789 37 100.0 35 ..................................... CGGATGATTCGCCGACCCTTGCGCGTGTAGCCCTC 11861 37 100.0 35 ..................................... ACGATGGTGGCCGCGCCGGGCTTGCCGTCGGTGAC 11933 37 100.0 33 ..................................... GTTGTAGTCGCCGCCGGTGGTGCGGACGTCGCT 12003 37 100.0 33 ..................................... GGGAAGCGGATAAGCGCGCGGCCCTCGGTTTTC 12073 37 100.0 33 ..................................... GATGTGTCCTGCTCCGCCGGGGCTGGCTGTGCG 12143 37 100.0 35 ..................................... CGTCAGCGATGGTGGCTTCGGGCTGAAGGCCTACG 12215 37 100.0 33 ..................................... AAGTGGGACCATCTCTACGACCTTGTGCGCTGG 12285 37 100.0 32 ..................................... ATCCGCGACGGTGCCACCCTGGACGCGGTCCG 12354 37 100.0 35 ..................................... AGAAGAAGCGCGCGGCGAAGGCCGACCCGCTGGCG 12426 37 100.0 38 ..................................... CAGGACGCATCCTTCGCCTGCTGTACCCGCTCGAAGAT 12501 37 100.0 33 ..................................... ATGAAGTCCACCCCGGCCGTCACGTCGGTGAAG 12571 37 100.0 33 ..................................... TCAGTGCCAGTGAATTCGGGCACTTGCGCGTGC 12641 37 100.0 33 ..................................... TCCTGGGCGGCGCGGTCATACGCGGTGGACATG 12711 37 100.0 34 ..................................... GCCTTGGCCATGCTCGTCTCCAGTCAGTGGCGCC 12782 37 100.0 32 ..................................... TTGAGCGTGTACTCGGCCGAGTAGTACGTCTC 12851 37 100.0 35 ..................................... ACCTCCGTCCCGCTCGCGGGCGCGGAAGCGGTGGT 12923 37 100.0 34 ..................................... CGATGACGCCCGAGGAGATTGCAGCAACTGAGGC 12994 37 100.0 34 ..................................... TCCATGGCGAGCATTTCGTTGAGCCACGTCGTGC 13065 37 100.0 35 ..................................... CAAGAGCACGAGGCGCTTCAGGCGATGACGCCTGA 13137 37 100.0 33 ..................................... ACGAGAAGGACCACTTCGTGCCTCACGAGGGCA 13207 37 100.0 35 ..................................... GGCTCCACGCCGTACACGTCCGGCTTCGGCAGCGC 13279 37 100.0 34 ..................................... ACCCAGTCGATTCCGCCCACCGTCCGGAGCATTC 13350 37 100.0 33 ..................................... ACGTCAGGGACGGCAAAGACTGGTGGGTTGACG 13420 37 100.0 34 ..................................... CGCCCGAGCCTCCAGGCTGAGCAGCCGCAGTGCA 13491 37 100.0 36 ..................................... GGGACCATCGTCGCGCTCGACGTCAACAGCATCAAC 13564 37 100.0 34 ..................................... ATGCGCAACACCAACGCCGGGAAACCGGTGCTGG 13635 37 100.0 34 ..................................... GTCATGGTGCTGCTCCTTTCAGACTGCCTTGGGT 13706 37 100.0 33 ..................................... CCCTCGTTGCGCTGCTGGTGGCCGGGCAGGTGT 13776 37 100.0 35 ..................................... ATGGCCTCGTGGGCCAACTGGAGGTTGGCCAGCAG 13848 37 100.0 35 ..................................... TGCTCCTCTCGGTTGGCTGCCTCTGCCGGGCGCCA 13920 37 100.0 33 ..................................... CTTTCGCCGTGTCAACTACCCCTCAACCACTTT 13990 37 100.0 33 ..................................... AGGTGGCACGCCAACTCCTCGTAGGCGTGGTCT 14060 37 100.0 36 ..................................... CATGGTCTTGCGCGTCACCTCGACCACAGCCGCGTG 14133 37 100.0 33 ..................................... CAGCGGTAGCCCATCAGTACAATGCAAATCCGA 14203 37 100.0 34 ..................................... TTCCAGCGCCGCTCCCTGACGCGAGAGCAGAGGC 14274 37 100.0 36 ..................................... TTGTCAGTTTGCTGGGTGAGAACGGCCACGGGGTGT 14347 37 100.0 32 ..................................... CCTGCGCCCCACGCGACGACCTCGTAGACCCA 14416 37 100.0 33 ..................................... CTCACCGCGAAGCTAGGCAGCGCGAAGAGGTAG 14486 37 100.0 33 ..................................... TTGTGCAGGATGGTGTTCCCGCCATCCCGCGGG 14556 37 100.0 33 ..................................... CGCGTTGTGGCCGGCGACTTGTGCCCCAGGAAC 14626 37 100.0 34 ..................................... GCCCACGTCGCGGCGGTGCTCAGGTGGGCCTCGT 14697 37 100.0 33 ..................................... TACGTCGCGAAAGCATCCAGGGCCGAGCGTGAC 14767 37 100.0 35 ..................................... CATCGTTCTCGTCATCGGAGCGGCGGGCATGGGCA 14839 37 100.0 33 ..................................... CCGCTGCTGCTGCTCTTGGGCGCGGGGTACTAC 14909 37 100.0 34 ..................................... ACCGAGTACCCGTCCAGGATGTCGTGCCACACCA 14980 37 100.0 32 ..................................... CAGGCGCCCAGCTCGCGCGACAGTGGGGCGGG 15049 37 97.3 33 ..............................G...... AACGTGACCATCTACTTCGGTCAGCGCTCCGAT 15119 37 100.0 34 ..................................... CGTCAACGCGCTCGGCGTACATCCGAGCCATGAA 15190 37 100.0 34 ..................................... TTTTTACATCGAGAGCGTTAGTGACCCGGATCCG 15261 37 100.0 34 ..................................... ACCTCAATGGAGCCCCTCCCACTGCTGCATGTGG 15332 37 100.0 33 ..................................... CCCACCTCAACGCCGCGTCGCGCGAGGCCGGGT 15402 37 100.0 33 ..................................... TGGGACTGGTCGCTCGGCACAAAGCTGCTCGTG 15472 37 100.0 33 ..................................... TTGAGCGCGCACAACCACGGGGGACAGTCCTGC 15542 37 100.0 33 ..................................... TGGGTTTTGCACTGCCCACCTACCCAGGCTTCC 15612 37 100.0 34 ..................................... CCGACGAGCAGCCGCAGCGCCCGCAGGCGACGCT 15683 37 100.0 33 ..................................... CGGTCGGTCGGCGAGCTCAAGACGGCCGATGCC 15753 37 100.0 33 ..................................... TTCAAGGCCGACGCTGGGCTGCCCCTGCTGGTC 15823 37 100.0 32 ..................................... CCTGGCTGTCAACGAACGGCACGCGGGTTCCA 15892 37 100.0 34 ..................................... CTCGAGCTGCGGCCCGATGAACGCGACGTCGTCA 15963 37 100.0 33 ..................................... TCGTAGTCCTCGTTCGGCAGCACCGTGGCCTTC 16033 37 100.0 34 ..................................... TGACTGCGCGACATGGAGGCCGCGCCGCTGGGCA 16104 37 100.0 35 ..................................... TATCTCTCGAAGGAGAGCGCCGCCGAGCCCGGACG 16176 37 100.0 34 ..................................... TTGCTCGGGCTCCCGCGCCAGGACGACGCCACCC 16247 37 100.0 39 ..................................... TCGCTGGAGATGGATATGGCAGACGCGGCGCAGAACGAC 16323 37 97.3 34 ........T............................ CGGGCCAAGGCGGCTACTGGGGGGACCCTGGCTG 16394 37 97.3 37 ........T............................ CCCGAGTCTGGATCTTCTTGGCGACGGACTGCACCTT 16468 37 97.3 36 ........T............................ GCGAACATCGCCTTGGCCACGCGCGGCGAGGTGGTG 16541 37 97.3 33 ........T............................ CGTAGATGCCGAGGCGCTTGCCACGCGCCTCAA 16611 37 100.0 33 ..................................... ACGGAGACGAAGGCGTCCCTCACGGCGCAGGTG 16681 37 100.0 35 ..................................... ACGAAACATGCGGCAAAGACCGCAGGAGGCCCGTG 16753 37 100.0 34 ..................................... TGCAGCTCCAGCCCGGCGCTCTGCAGCGTCCTCC 16824 37 100.0 35 ..................................... TTCGGCTTCGGCTTCTTCGCCTTTCGGCGCTCGTC 16896 37 100.0 34 ..................................... CTCGCCCGGAAGCTGGGCTCGGCGTCCTTCAACA 16967 37 100.0 34 ..................................... CAGAAGAGCTTGTCAGCCTGGGTCCAGGCGGCAG 17038 37 100.0 34 ..................................... CACTTCGTGGTTGTCCCTGGGGGCCGTAGTTGAA 17109 37 100.0 33 ..................................... CGCCAGCGGCTCGGCCAGCATGGCAATCTCATG 17179 37 94.6 34 ..........A..G....................... TCGTTGGCGCCCGTGGTGGCCCGCTTCCCCACCG 17250 37 97.3 33 C.................................... CAGGCCCAGGACAGAGGGTCCGGCACTGCATTG 17320 37 100.0 33 ..................................... ATAAACGCCAGGGCGCCCAGGTATCTCCGTCTG 17390 37 97.3 35 ..................A.................. CTCATCCCGGAGGGGCGTGGCCTCCCTCGCGTGGG 17462 37 100.0 33 ..................................... AGGAATCTCACGGTGAAGCCTGGCGCGGAGCTT 17532 37 100.0 33 ..................................... TCGAAAGAGACGGTCGCGCCGATGTTGCGCGAC 17602 37 97.3 33 ..T.................................. CACCATGAGCAGCAAGAGCTGTACGAGCGATAC 17672 37 100.0 33 ..................................... GACTTCGACTACGAGGGAGAGGAATACGAGGCG 17742 37 100.0 33 ..................................... CCGCTGATGCGCAGTGCTCGTGTGGCCACACCC 17812 37 94.6 32 .........T.......A................... CTCGGGTGCCGCTCGCTCCGACGACGCGCCAG 17881 37 100.0 33 ..................................... TCGGACTGGAGCCTGGGCACAAAGCTGCTCGTG 17951 37 100.0 36 ..................................... GTGTCTCGCGATGGCGCGCTCACCGGCGGTAGGGTC 18024 37 100.0 33 ..................................... CGCCCAAAGAAGGGCGCCTCTGGGAAGAGGAAG 18094 37 100.0 35 ..................................... GCATCCACAACGGCGGGGATGAGCATGAGGGTGTG 18166 37 100.0 33 ..................................... CCGCGTGACGAGCGCGGCGAGCGGTTGCCCCGG 18236 37 97.3 34 ..............................G...... GCGGGGAACGACACTGAACAGCAGGTCGTCGGCG 18307 37 100.0 32 ..................................... CTCGTTCTCGTGCGAGTCGCGCAGCATCGGCC 18376 36 81.1 0 ........................T.-..T...TTGG | ========== ====== ====== ====== ===================================== ======================================= ================== 129 37 99.6 34 GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGCTTGACTGTGTTGATTTGCTACGACGTGCGGGTGTCGGACCCCCAGGGGCCTCGGCGCCTGCGCAAGCTTGCGCGGGCTTGCAGGGACCATGGCGTACGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCTCGCCTGCTCGGCGTATTTGACGCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGATGATGCCCGGAAGACGGAGCATCACGGCGCCAGGGCACCCCTGGACGTCGAGGGGCCTCTGGTCCTGTAGGCCTCCGCGAACCGCTCCCGGTGTGCGCTCCGTCGAGGGTTCGCGCTCTTTGAAATCCCGAATAGAATCAGTGGGTTGGGGGCGTGGGCGGCAGGAACGGCGGGGCGCTTTCGTGGCGGCGAGGGCCGGTTCGCGAAATCCGGCCGGATTCCGTAGTCAGAACGCTATGTTGGAGAGGCGGG # Right flank : GCGGTCATCAAAAGCGAGAGATTCTGGTCATCGCGGAGTGCGGAAGTCGGGTCCTCGGGAAGCACGGGTATCGAGTCAATCTTGATTTCGACAGGCTCAGGGTCGAGTGGATTCCTGTGATAGCTCAGCCCCTCAAACGGGGGCTCCTGCGCATGAGGCACGGCCACCAACTCGCGAAGATGCTCCCGAAGCACCACACCGCGAAGGTCGCCGACGAGTGGGGATGCCCCGGGCATGCAAACCGACCGGACGTGCATGTGAAGTCGGGTCGTGAGCGTGACTGCCGAGCGATAGCGGTCGGTGCCGGGCGGACGTTGGAGCCGTACTGGATGAAGGGCACCCTGGTGGGTTGGAGTGCGAGCTGCTCGTCCCGTACCTGCTGCCGACGAGGCGGGTCGCGACTTACAGCGTGCCGCTCGACGGGAGCGTGTTTCTCTGGAGTAGAAAGGTGTACCGCTGAGCTGCGGCAACTCGAACCGGACGCGTTCGGGGCTGGCTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //