Array 1 2538282-2538668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034073.1 Shewanella sp. M2 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2538282 28 89.3 32 TC.G........................ ATTCATCAATGCTTGTGCTGCAATAATGTTTT 2538342 28 100.0 31 ............................ TGATAAACTTCCGAAAAGCGTTGTAGTTTAG 2538401 28 100.0 32 ............................ GTGATTGTGGACACTAACACGCAACACCTCTG 2538461 28 100.0 32 ............................ TTTTCTTTTCAACGCAGCAACGATAATCTATT 2538521 28 100.0 32 ............................ CTGCCATCGCCACTATTTTCTGCTGATTTTAG 2538581 28 96.4 32 ....................G....... ACAATCATACTGATTTTTAGAACCTGCTCGAA 2538641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : GATGCTTAAACGCAGCGGCGCACAATATTTAGTCGAAATCATTGATGGACCCTTAGTCAATCGTCACAAGCCTTCGGTGGATGTATTGTTTAGATCGACAGCAAAATGCGCAGGTAAAAATGCCGTTGGTTTTATTTTAACGGGTATGGGAGATGATGGCGCAAGGGGGCTAAAAGATATGTGTGATGCTGGTGCATCGACTGTAGCTCAAGACGAACAATCTTGTGTCGTGTTTGGTATGCCTAAAGAAGCCATCGCATTAGGGGCCGCCAACAAGATATTATCTCTGAATCAAATCCCACAAGAAATTATGCGCTATGCTTATTTAAAGATCTAGAGTTTCTAACTTCAAAATTGTCAGGTGAACCGTAGGAGCTTAAACACCAAAGTGTTTCTGGATATCAGCCTGAACTGGCGGATAACCGTTCACTTTGCTGTAATAATAAATAAACGCGAGGTATTGGCCTTGCTTCACGTTAAATGCAGGGTTAATTTTTTTC # Right flank : AAAATGGTGAAGAGTTAAACCAATAATGCACCCATTTACCACCAAGTCAAATTGTACCGATACTTGCTGATAAAGGGATATATATAGGGTCTGAATCGAGTATTTACAGAATATTAAAGAATAAAAAGCAGCTTCAGCATCGTTTAAAAAGCAAGTCTGCAAGAACGGTAATTAAGCCAAAGGCATTAACTGCAACCGGCCCCAATCAGGTGTATATACTCAAGTGAATTCAAACTGCAGTTTTTAATTTCTGAAAGTTATCATTAATTGTATCACCGAGTGTATCGGCAATATCGGGGAGGGTGATGCTAAAAAAGTCAGTGATTTTTCGTCGGAATTCTTTTGTCGTTGCGAAGTATTGCCCATTCCTCGCATGCTTATTCATTACCTTCCACAATCGTTCTATTGGGTTTAAATTTGGACTATAAGGTGGCAGGTAATGCAATGTTATATTCAGATTTTTAGCCTCTTTAACCACTAAGGCATTTCGATGGTATCCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4575861-4573209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034073.1 Shewanella sp. M2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4575860 29 100.0 32 ............................. AAATTTTAATAAACGGAAAAAACCCATTTGAA 4575799 29 100.0 32 ............................. TTTGAACGTACCGGTGTTGCTCCTATTCAAAT 4575738 29 100.0 32 ............................. CCTGCTTTATATCTTTATAAATACTCATGATT 4575677 29 100.0 32 ............................. TGCAAAAAATAGCATCAAGAACAATAACGCTA 4575616 29 100.0 32 ............................. ATATGAGCGACTTAGTCGATGCACACAAGTCA 4575555 29 100.0 32 ............................. CATGTGCAGAACACGATTTGTCGACAGAAGAC 4575494 29 100.0 32 ............................. CCTGAAATGTCCCCGATTAAAGGGCAGTGGCA 4575433 29 100.0 32 ............................. TTCGCTATCGTTAATGATATTGCATCATTAGC 4575372 29 100.0 32 ............................. GACGTAAAACTGCCGCTATTGTTTCAGAGGTA 4575311 29 100.0 32 ............................. GACGTAAAACTGCCGCTATTGTTTCAGAGGTA 4575250 29 100.0 32 ............................. GCGACGGAGGGCATGTTAACCTAGTTGAGTCG 4575189 29 100.0 32 ............................. CGTTTTGTTCAATATCTCGGCTAGTGTTTCCT 4575128 29 100.0 32 ............................. CAAAAAATTGAATCTATAAGTGGTGGCTCAAA 4575067 29 100.0 32 ............................. TTGAAACGGTTGCGAGTAGAATTAACCCGTTT 4575006 29 100.0 32 ............................. ATTTGACTAGCGAGGGAATGGGCGTTTTTTCC 4574945 29 100.0 32 ............................. TTTGATAACGAATTTTGCCAACGCACCGGCAA 4574884 29 100.0 32 ............................. CGGAGGTATTTAATGTTGGTGCTATATTCGCA 4574823 29 96.6 32 ..A.......................... AAAGCACAACCTTATAGCCATTTAACGCAATT 4574762 29 100.0 32 ............................. CCTTTTTAGAAGATATGGGCGTCAATGTTGTG 4574701 29 100.0 32 ............................. CCGTGACCGCATTGTTTTTGTATGACCGGACA 4574640 29 100.0 32 ............................. CATTAGATACCGCAACCGACGCCAGCCAAGAC 4574579 29 100.0 32 ............................. CAAACACATCTTTACTAATAAGATTTACATCT 4574518 29 100.0 32 ............................. ATTACTTACATGTTGATCACATTGGTTGAGAT 4574457 29 100.0 32 ............................. CCAAGTGTACTCACTGATATACCTACAATTAA 4574396 29 100.0 32 ............................. CCTAATTCGTGCGCCTTATCTATTAGTCGCGG 4574335 29 100.0 32 ............................. CAGTCTGCTGGTAGATATGGCGGCACGTATGT 4574274 29 100.0 32 ............................. TTATCAGAAGGTCAATTCACGACATACAAGTC 4574213 29 100.0 32 ............................. TTTGCATTTGAGCAAAACCATCAGAATTAGTT 4574152 29 100.0 32 ............................. CACATTCAGAAAGCCATTTAAAACGATACCCA 4574091 29 100.0 32 ............................. GTTGTGCAAGGTGAGCAAATCTCACGTAAGGC 4574030 29 100.0 32 ............................. CCAACTTATTTGAGAAAATGATGCACACAAAC 4573969 29 100.0 32 ............................. CAACTACGCCAATTACAACAGTACCAACTGAG 4573908 29 100.0 32 ............................. ATTGTGTGCACGAATTTGGTAATGATTTTGAT 4573847 29 100.0 32 ............................. ATTGTGTGCACGAATTTGGTAATGATTTTGAT 4573786 29 100.0 32 ............................. TAGCTTTCATAATTAAAACCTTATTAATTGAG 4573725 29 100.0 32 ............................. CACTTGCGGGGTTTGAGTCTACCCACTTAATA 4573664 29 100.0 32 ............................. AATGTTTCATGGAGGTGGCAGCATGAGTTTAG 4573603 29 100.0 32 ............................. GCGCTCGACATTTCTGAGCCCGTAGTTTTAAA 4573542 29 100.0 32 ............................. CCAACCATTTGCATTGGGTTCATACCTGAAAT 4573481 29 100.0 32 ............................. TAGTGCGCTTAACGCCCCATTCATCATTAACA 4573420 29 100.0 32 ............................. CATTACCTGCAACCAGAACGCCATCGATAAAT 4573359 29 100.0 32 ............................. GACATAAAGACGTAAAAATGGCGGGTATAGAA 4573298 29 100.0 32 ............................. GTTTGTTGTCTGCATCAAAGAAAAAAGGGCGT 4573237 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : GCCTGTGTACTTGATTTAGGGACCAAAGAAATCGTTGGGTATGCCTTATCAAGCCAACCCAATGCAGCGTTAGCGACAGCGGCATTAAATAACGCGATACAACGTCAGAGGCCAAATACACAGGAGTTGATGTTTCACTCAGACCAGGGTTGTCAGTACTCAGCTAAGGTGTTCAGAGAAAAGCTAAAGCACTTAGGCATTGAACAAAGTATGAGTCGTAGAGGAAATTGTTGGGATAATGCGGTGATGGAACGATTTTTTAGGAGTTTAAAGACTGAAAGATTAAACCGTTTAGCTTTTACCAATCACAGCGCAGTAGTGAGCGTGGTTGAGCAATATATTCAGTTCTACAATTACAAACGCAGACATTCGGCAATAGATTATAAGACGCCACATCAGAAATATAATGAGTTAAAAAAAGCGGCTTAAAATCTCTCCAGAAATACTTGACCATTACAGGCTGAACCGGAAACGGGCGAGATAACAACCAAGCGAAGCGA # Right flank : CGCAATACAGGACGCAGTCCGCTCTAGCAGCGAAGCGATCCTAGCCGCGAAGTGTTCGCTTTTTTATCACGCAGTGAGTGCTTTATTGCTGTTACAATGATTTTTCTCAATACTCAACAGGGGACGTTGTCCGTGAATACTTTTCGTTTATTGGCCGTGTTTGGTGTTTTTTTGTTGCCAAGCGTGAATGCTGCGCCATTTCAATTTGATCAAAAAACCTATCGTCAAGATGTGCAAACCCTCGCCAGCGATAAATTTGAAGGTCGTGGGCCCTTGTCACATGGTGAGAAGTTGACGGTGGAGTATGTAGAGCATGCATACAAGGCCATGGGTCTTAAGCCGGGCTTTGGTGACAGTTACCGTCAAGCTGTGCCGATGGCAAAAATTACTGCTGACCAAACCATGCAGTTTAACATTGGCGATTTGGTTTTTAATAATGGCACTGATTTCACCGCGCGCACTGAGCAAGTTTTGCCTCAAGTTGCGTTAGATAATAGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4577608-4577151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034073.1 Shewanella sp. M2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4577607 29 100.0 32 ............................. CAATTTTATCGCAGCGTCGTGCTTGTAATAGT 4577546 29 100.0 32 ............................. GATTGAGAAAAAGCACGGAAAGGCTTACGCAC 4577485 29 100.0 32 ............................. CAAACGGCCAACACCAAAACCTAAAGCAGCTA 4577424 29 100.0 32 ............................. GCATATGGTCATCGTTCTTGTGATGATGTAGG 4577363 29 100.0 32 ............................. CCTGAACATTTAGAAGATGGTGATACCGATGA 4577302 29 100.0 32 ............................. CATGGCAGGTATTACGTGATTTGGCATCGATT 4577241 29 100.0 32 ............................. CCGCCATACCCAATCGGCACCGAGACAACCCA 4577180 29 86.2 0 ....................TT....TG. | T [4577153] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : TAAACCATAGCTATCTACCGCGAGATGGATTTTGCTTGTATTACCACCACGACTTAACCCAATTGCTTGATTTTCATCAGATGATGCACCTGAACTGTGTTGATGGGCTTTTACATAACTTCCATCAATAAATTCCCATTCAGTATCACTATTAGTCGATAATGTTTTGAACAGCCTAAGTAAAATACCTTTTCTTGACCACAGTAAAAATCGACGGTAAATGGTATTCCATAAGCCAAAATATTCAGGTAAATCTCGCCAAGGGCAGCCAACACGCAATCGGTAAAGGATACCTTCCATCGTAAATCGATGCTCTTGCTTGTTATAAACTCTATCATCAAGCAGAATAGCTTTTAGCTTCGACCACATCTCATCAGTGAGCATTAATCGGGGCATGGTAATCTCGTTGTATTTGTTTTTGGCGAAGTGAATTATACGAGATTACCTTCTTCGCACAAAATTCAAACAAAGATCAACAGCCCCTAATAAGATTTGAATCT # Right flank : TCTAATGAAACTGTAGAGATTTATAGCTTAAAATAAGCAAAATCTTAAAGGTATTTATTATGATTAGAAAAACTAAAATCACTGTCAGCCCTCTTCAAAAATTAGAATATGCCAAGCTGATGGTCGAACAGGGTTACACGAACAAGCAAATTGAAGATATGTCAGGTGCAGGTAAATCTGCGGTGTCTAGATGGAAAGTGCAGTACCAGGCTGAATTAGCCGGTAAAACACCGAAAAATGTCAAAGCATTAACTGAAGAACAACGAAGAATACAGCTTCTAGAAGCCCAACTAAAACAAGCCATGAGGGATAATGATATCTTAAAAAAGGCTGCAGCTTTCTTCATTCGAGACAATCAAAACTTAAAATGATGCGCGAAGTAAAGAAAGCAAACCCAGGCTTTAAAATGAGTGAATTATGCCGAGTATTCGAGATCAGTTGTAGTAGTCTCTATTACAAACCGATCCCAAAAAGCGTTGAAAAACAGGCTCAGATACAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 4579011-4578494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034073.1 Shewanella sp. M2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4579010 29 100.0 32 ............................. GTGTGGTGTGTACTAGAAAGGTATGGAGTTGG 4578949 29 100.0 32 ............................. CACCCGAAATTGTATCAAATGCCTAAGAGGTA 4578888 29 100.0 32 ............................. TTCGGCAGGGGGTTAATTGTGTCAATTGTAAA 4578827 29 100.0 32 ............................. AAATCGAATTCTATTGGGAAGACCGTACAGGC 4578766 29 100.0 32 ............................. GTTATTCAAACTCATTTATGCCACGCCCTAAT 4578705 29 100.0 32 ............................. TAAGTGTAATTGTAGAAGTAACCCCCGTAAGA 4578644 29 100.0 32 ............................. CTAGGCTTGATATTATTAGTTATCGAAACAAA 4578583 29 100.0 32 ............................. CCCCTAGGCGATGGTGTTGGTTATCACGTTGT 4578522 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGTATCCACGGGGCTGAACCG # Left flank : TTTTAAGCGCCGGCGAGATCACACCGCCAAAACCTTATGAAGATGCCCAGCCACCCGCTTTGCCAGAACCTGAATCTATTGGTGATTCAGGTCATCGTACAAGTTAGGTTTGAAGATGAGTATATGTGTTGTTGTAACTGAAGCTGTACCACCGAGATTAAGAGGTCGTTTAGCTGTCTGGCTTTTAGAAATTCGTGCTGGTGTTTATGTTGGCGACGTAGGCAGAAAAATTAGAGAGATGATTTGGCACCAAGTTACCGAACTTGCAGCACAGGGGAATGTGGTCATGGCGTGGGGGACAAACACTGAATCAGGTTTTGATTTTATTACCTATGGGAAAAATGCACGTATGCCCATTGATTTAGATGGGATAAGGCTCGTCAAATTCACGCCAATTAGCAGTGAAAATGGTACAGAAAAATAAGTGTTAAGTTCTTTAAAAATTTGGTAGATTTAGTATGAGTGTTTTTATTCAATAAAAACAATTATATGCTATTAGA # Right flank : CAAACACATCTTTACTAGGGGCTGTTGATCTTTCACATTGGCAGCCAAATTATAGAGCAAGCTAGAGCCAGCAGGCTTTCAAAATTAATTTTCAATTTATCATAGCGGGTAGCTATCGCTCTAAAATGCTTGAGCCGAGCAAAAGCATTTTCAACTAAATGCCGATATTTGTATAAACACCAATCGATATCGCCATTTCCTTGCTTCGAATTTTGTCTTCTAGGGATCACTGGCTTTGAACCACATTCACGCACTTTATCTCTAATCGCTTCACTGTCGTAGCCTTTGTCTGCAATAATAAAATGACTTTGTGGCAATAGTTCAATAAGGGCATTAGCTGCTTTGCTATCATGAACTTCTCCACCTGTAACAATGAATTCTATCGGTAAACCATAGCTATCTACCGCGAGATGGATTTTGCTTGTATTACCACCACGACTTAACCCAATTGCTTGATTTTCATCAGATGATGCACCTGAACTGTGTTGATGGGCTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //