Array 1 106262-107265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUU01000008.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N30677 N30677_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106262 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 106323 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 106384 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 106445 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 106506 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106567 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 106628 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 106689 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 106750 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 106811 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 106872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 106933 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 106994 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 107055 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 107116 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 107177 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 107238 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123523-125186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUU01000008.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N30677 N30677_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 123523 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 123584 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 123645 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 123706 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 123773 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 123834 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 123895 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 123956 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 124017 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 124078 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 124139 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 124200 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 124261 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 124322 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 124383 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 124444 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 124505 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 124566 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 124627 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 124730 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 124791 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 124852 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 124913 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 124974 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 125035 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 125096 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 125157 29 96.6 0 A............................ | A [125183] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //