Array 1 68498-68183 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273116.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 68497 32 100.0 38 ................................ AGCTGATTGACGCCCGTAGCAGCCAGACCGGATAATTA 68427 32 100.0 39 ................................ TTAATCTGCATGAGACCATAATCCCCTGTCTTACAATTA 68356 32 100.0 37 ................................ TAAGACCTCTCGGGCCCATAGGTCCTGTTCCTCATTA 68287 32 100.0 40 ................................ TAAGCTTGCACCGACTTAAGCGCTTGCTGTCTTGGGATTA 68215 32 93.8 0 ........A.....................T. | A [68188] ========== ====== ====== ====== ================================ ======================================== ================== 5 32 98.8 39 GAAGAACCGATATCCCCGAAGGGGACGGAAAC # Left flank : ACGAACAAGGAGCCACTTTGCTTACTGTTTCTTGCATTAGAAGAACCGATATCCCCGAAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAACCGATATCCCCGAAGGGGACGGAAACTTCCGGTCGAAGTTCGGGAACACAAGCCCCGTTATTAGAAGAACCGATATCCCCGAAGGGGACGGAAACCCACTCTGGAGATTTGCTGTTATCCCTCCTGTATTAGAAGAACCGATATCCCCGAAGGGGACGGAAACAGAGTCTCCACTACTTGAGATAGTTCTCCGATATTATTAGAAGAACCGATATCCCCGAAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGAACCAGACGGTGACTTTATAGGATGGAGATTTGTGGGCCAATATCGTTGCAAAGAATGAGGCAAAAAGACCTTGTTGGAAATGTCTCTCTGGATGACAGTTGCTTGAGTGGGAATCATGAATTTATCGCGGGAGGATATGATATGAGGGAAGTATGAACGTTATGACTTAGCAGCTAATGGCGCCGGAAGCAAGGATGAGGGCGCAGGGGGAGAGAAAATGTTCTTAGGAGATATGGAAGAGTTTCAACTTATGGGGAAAGAAATATGAGTTATCTGTATGTATGCGAGCAGGGAGCCGTGATTGGCTGTGAGGCCAATCGCTTTCAGGTCCGCTATAAGGATGGGATGCTGAAGTCCGTGCCGGGAGAGACGCTGGAGGTAATCGAAATTTTTGGAAAGGTATAGTTGACGACGCAGTGCATGACAGAATGTTTGAAGAGGGGAATCACTGTGCTTTTTTATTCGTCGAACGGTGCTTACTATGGTCGGCTCATTT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAACCGATATCCCCGAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 68931-69241 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273116.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 68931 32 100.0 37 ................................ GCAAGAAACAGTAAGCAAAGTGGCTCCTTGTTCGTTT 69000 32 100.0 37 ................................ GAGGAACAGGACCTATGGGCCCGAGAGGTCTTAGTTT 69069 32 100.0 36 ................................ ACAGGAGGGATAACAGCAAATCTCCAGAGTGGGTTT 69137 32 100.0 41 ................................ TATCTATAAGAACCGCTTTTGCTGAAGTTAGCACGTCGTTT 69210 32 87.5 0 ............................NNNN | ========== ====== ====== ====== ================================ ========================================= ================== 5 32 97.5 38 CCGTCCCCTTCGGGGATATCGGTTCTTCTAAT # Left flank : TTATCCGGTCTGGCTGCTACGGGCGTCAATCAGCTGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCCCTTCGGGGATATCGGTTCTTCTAATAATATCGGAGAACTATCTCAAGTAGTGGAGACTCTGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATACAGGAGGGATAACAGCAAATCTCCAGAGTGGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATAACGGGGCTTGTGTTCCCGAACTTCGACCGGAAGTTTCCGTCCCCTTCGGGGATATCGGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCTTCGGGGATATCGGTTCTTCTAATCCTTGTACTGCGGATATCCACAGTACTCGAAGATTGAAGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATTATCAGCTGTTAAGCCTTTGATTACTCCCTTGATATCGTTTCCGTCCCCTTCGGGAATATCGGTTCTTCTAATTGTAAGCTGACTTTCCTGTAGTCTCTATATCAAAACGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATTAAGCCTTCCCGTACTCCTCGAAAAATTTCTGAGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCCCCTTCGGGGATATCGGTTCTTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 70903-71147 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273116.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 70903 36 100.0 35 .................................... TGCACTGGAACTTGTATACAGTCGTGTGCTGATGA 70974 36 100.0 34 .................................... TCTGGACCCGCGTTTGGCCTCACGGTATCCAGGT 71044 36 100.0 32 .................................... ACAGGAGGGATAACAGCAAATCTCCAGAGTGG 71112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 100.0 34 GTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCTTCGGGGATATCGGTTCTTCTAATCAAACTATTGAAGGCGTTAGCTGGAGCAGAGCTAATAGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATCATCATACAGAGAGGATGATGCAGGGAATAGGTATGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATTATTATTTCTTCATTCTTTACGTCCTCCCATAGGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTCGGGGATATCGGTTCTTCTAATAATTACATTGGGTTAATGTAAAAAAGTTAAAGAAAA # Right flank : TCCTTTGCTGGGAATCTTATCACTCTCGAGAGCACTGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCCCTTCGGGGATATCGGTTCTTCTAATACTATGATGAGGATTGCGGGGACGTATATATCAGATGAGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATATGAATATGCTAAGATAAGAAGAAAGGCTATAGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAATGAGAGCTGGAATAACCGCTGATAACGGTATCATCGGTTTCCGTCCCCTTCGGGGATATCGGTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTCGGGGATATCGGTTCTTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 45697-45460 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273129.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 45696 33 90.9 36 ACA.............................. TCTAAGGTCCACTTTAACAGGTATCATAATGCACTG 45627 33 100.0 34 ................................. CGTAAACCCTCTTCACCATGATTTGCGGATCGTC 45560 33 97.0 35 ...........T..................... ACCGAACTTCTCGGAAATCTTATTCAGGCCCTCTT 45492 33 93.9 0 .................A....C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 95.4 35 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : CTGCTCAGCTTTGAAATGCTGGAAGAGATACGCTTTCTTCTGAACATGCACTTTGATGCGGAAAGTCCGATCGGCCTGATTCTGGCCGGGCAACCTGAACTCAGGGCAAAGCTGGGACTTCAGAAATGCACTGCGATACGCCAAAGGGTAAATATACAGAGTATCCTGAATCACTACGATCTGTCTGAGACAACGGCTTACATCTCACACCAGATGACTGTTGCCGGTGCCAGGAGCGAGATCTTCACAAAGGAAGCTATCCGGAAGATCTTTGAATACAGCGCAGGCATACCGAGATTGATCAATAACCATGCACGAGCGTTCTGATGTATGGCTGTCAGAATCAGATGCGGCTGATCGATGATCACGCCGTCAGCACTGTTCTGGAAGGCGAATTTTCATAAAGTCATTGCCGGGATCGTCCAGGATGCCGGACAGAGATCCCGGCTGAATGAAGACAAAAGGTTCCGGTTATTTCCGGGCAAAAGCCGCCGACTTTA # Right flank : TCAATGTCATCCAGCACCAATAGATCAGGTCTCCAGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATGTGGAGATGACGTACACTACAGAAAATTCTTATCATCGCTCCCCGCGAGGGGAGCGCGGACTAAAACGAAATAGGAAGAGAAATCATTCAAGGAGCACACCAGTGCAGATGCTGACAGTGCTTTGCTTGCTTCACAGTGATGCCAATCATTTTGGCGGGGAGGGCGGAAAATCATATGAAGGGAGGGGCAGCGTGAGAAGATCAGAATAAAAGGAGATCAAGATACCCTGGTATTAGGGCGAGAAGAAACAGAAATGGAAGCGGAGCCCCGGGTTTACGACAGGGCATCCACTTAGGACA # Questionable array : NO Score: 6.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 49013-48844 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273129.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 49012 33 100.0 36 ................................. CAAACTCTATCGTCAGGCCACGGATATCATAGGCGG 48943 33 100.0 34 ................................. CTTTCCTCCCGCGGTATCATCCTTCAGGATGCAG 48876 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 36 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : GCTGGTATCCTTCCGAAAACCCGCGCCCTGCCTGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAGATATTTTGGTTATGATTTTCTGAATTTCTGCGTCGTCGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATTCCTCATCTGAGGTATTATCTACTGAACCAAGACCGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCCGGCGCCGTCAATGGATATCGTCATACAATCTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATATTGACATACTGCGACTTTTCCGCCACCTCCGTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATGAGCTGATTACGCCGGAGAGCTTCATGATCTCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCCCCGCGAGGGGAGCGTGGATTGAAATTATATCTGGGAGTCCTTCAAACCAGACAGAGGTGTCGCTCCCTGTTAAAGCCATTACCTAATGGCCTGTTTCCGGCGGCTTTGCCTGTCCGGTAATAAACGACTATAATGACCAATGAAGCCAGATAGATGGAGGATAAAAAAGAGCATCCCCTTGCTAGTATTCGTTAGTGGCGATACCGGGAATGCTCCTGTCACAACTGACATGGTCATTGTACATTCTTACGAGCTGGAACTCAAGCCCGGTACGCAGGATTCTTTTATGTAAGGAGCAGGGAAATATCGCACTGCCCCTATTGTGATGGCGATCTGGAAGTAATCGGAAGCCGGAAGCGGAAAGGATACAGAGAAGACGGATCCACCGCCACTCT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 49814-49244 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273129.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 49813 33 100.0 34 ................................. TCTGAATTCCGCAGAATTCGGGGAAGAGCATGAG 49746 33 100.0 33 ................................. AGATGGCAGCAAGTCCGACAGATCAGGAGCATG 49680 33 100.0 35 ................................. TATTGCAAATCATATTCCGGCGAAAGATTTTTACT 49612 33 100.0 33 ................................. CCATGACTTTTCCTCCCTATAGTTTGGGCAAGC 49546 33 100.0 35 ................................. AGCTGGTATCCTTCCGAAAACCCGCGCCCTGCCTG 49478 33 97.0 35 ..............................G.. ATTTTGGTTATGATTTTCTGAATTTCTGCGTCGTC 49410 33 100.0 35 ................................. TCCTCATCTGAGGTATTATCTACTGAACCAAGACC 49342 33 100.0 33 ................................. CCGGCGCCGTCAATGGATATCGTCATACAATCT 49276 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 99.7 34 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : TTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGAGGGGAGCGTGGATTGAAATCTCTTCACAATATGATGAAGGATATCGGCTCTTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATACATAAAAGTGTCTTAAAAAGATACAACAGGCAAAGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATGGCAGAGGGAGATCCTGAACACGGCAAGGAGAGGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCACTGTCGGAGTCGGGAGATCAATGGAAAACGG # Right flank : ATTGACATACTGCGACTTTTCCGCCACCTCCGTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATGAGCTGATTACGCCGGAGAGCTTCATGATCTCCGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCAAACTCTATCGTCAGGCCACGGATATCATAGGCGGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCTTTCCTCCCGCGGTATCATCCTTCAGGATGCAGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 50145-49977 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273129.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 50144 33 100.0 35 ................................. ACATAAAAGTGTCTTAAAAAGATACAACAGGCAAA 50076 33 100.0 34 ................................. GGCAGAGGGAGATCCTGAACACGGCAAGGAGAGG 50009 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 35 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCGCATAATCGCCCTTGCGTAGGGAGTATCTTCCGCCCGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATTAATGATCGACTGAAACCGGCCTTTCGGTTAATTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCAAAACAGCAGATGCGGATGATCGGAAGCGGTCAGGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCAGAGTGGACAAAGATGATTACCGGTGGAGTCGAGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGAGGGGAGCGTGGATTGAAATCTCTTCACAATATGATGAAGGATATCGGCTCTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCACTGTCGGAGTCGGGAGATCAATGGAAAACGGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATTCTGAATTCCGCAGAATTCGGGGAAGAGCATGAGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATAGATGGCAGCAAGTCCGACAGATCAGGAGCATGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATTATTGCAAATCATATTCCGGCGAAAGATTTTTACTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCCATGACTTTTCCTCCCTATAGTTTGGGCAAGCGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATAGCTGGTATCCTTCCGAAAACCCGCGCCCTGCCTGGT # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 50613-50307 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI273129.1 Oribacterium sp. oral taxon 078 str. F0263 Scaffold546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 50612 33 97.0 37 N................................ CGCATAATCGCCCTTGCGTAGGGAGTATCTTCCGCCC 50542 33 100.0 34 ................................. TAATGATCGACTGAAACCGGCCTTTCGGTTAATT 50475 33 100.0 36 ................................. CAAAACAGCAGATGCGGATGATCGGAAGCGGTCAGG 50406 33 100.0 34 ................................. CAGAGTGGACAAAGATGATTACCGGTGGAGTCGA 50339 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 98.8 36 GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Left flank : AATTATTGATGAAAAAATAGACAGTCTTCGCTTTTATAATCTTGGAAACTCTCATAGGGGCAAAGTAGAGCAGATCGGGAGGAAACAGGGAATTCAAGTGGAGGAAGCCTTGATTTTCTAGCTTCAATCTTCTAGTGCGAACGTGAAGAGATCATGAAATGACCGAAGGATTCGCACCGAAAAAAATGAACATATCGCATTGAATCGCCGACTAAAAAAGGATTATTTTACCACGCTGTACTTATCAAGAGAAACATGCTATTTTTATTGAGAAACAGAAAGAATATTTATCTGTTTCACTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCGTGAAAGGAATGCTGATTGGCGGGGAATCTGCGCGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGAGGGGAGCGTGGATTGAAATCTCTTCACAATATGATGAAGGATATCGGCTCTTGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATACATAAAAGTGTCTTAAAAAGATACAACAGGCAAAGTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATGGCAGAGGGAGATCCTGAACACGGCAAGGAGAGGGTCGCTCCCCGCGAGGGGAGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCCGCGAGGGGAGCGTGGATTGAAATCACTGTCGGAGTCGGGAGATCAATGGAAAACGGGTCGCTC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //