Array 1 33000-32728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAF01000030.1 Ligilactobacillus salivarius strain 609_LSAL 109_33047_406679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32999 29 89.7 32 ........C..................TA TCACAGTACAGTTTTCCAATGACAATGTTGGC 32938 29 96.6 32 ........C.................... TGGTAGACATAAGTGCTCCCCGGTTGGCAGGC 32877 29 100.0 32 ............................. AATTTTGCTCATTGATGTATGAGCTTCACTTG 32816 29 100.0 32 ............................. TGAGTTCCACTCTCAATATTGTTGTGTACTTT 32755 28 82.8 0 .......T......T.C....-.....A. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTGTTCCCTATGTAAGTGGGGGTGATCCT # Left flank : GGGGGGGGGTGATCCTGACCTGTCCCAATCTCTGATTAAATCGTCAG # Right flank : TTAAAAAATTATAAGGTCTTAAGTTATATTTCTAAAGTACTTTATAATATAGATTATAATATCCTCTGAGTATACAGATGAAATAGAAAATGCCTCTGATGCTCAGGGGGTATTTCTATGGAAAAAAATCTAAATATTCAGTTGAAGGAAAACTATCAATACTTAATGAAACTTCACATATCGGAATTTTTGAAGTAACAATTAAGTATGGAATCGATTATAAAACTATTGGACGATGGAGACTGCTTTATCAGTATCAAGATCTTTAACCAAGTAATAGAAATCAGAATTATTCTAAGGAATTCAAGTATTTATTAGTTGAGCAATACAAACATTTAAACGAACCCGCAAAACTATTTGTGATAAAAAAGGTCTACGTTCAGTAATTCAGTTTAGGCAATGGATTATCTGATCCGGTATAATGAATCTAACTTAAGGACCAATGATCCAGAAAGAGAGATTCAAAAAAGAGTGGACGTAAGACTAGTTTTGAAGACCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATGTAAGTGGGGGTGATCCT # Alternate repeat : GTGTTCCCCATGTAAGTGGGGGTGATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59084-59482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAF01000039.1 Ligilactobacillus salivarius strain 609_LSAL 151_184740_2153066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 59084 37 100.0 34 ..................................... ACAGTACCTAAAATTCTTTTTTCAAATAATTCAG 59155 37 100.0 35 ..................................... AAAAATTCTTTTATTCATTAACATAATTAATACAC 59227 37 100.0 35 ..................................... TTCCTTTGTGTTTCCATTTTGTTTCTTTATGCAAT 59299 37 100.0 33 ..................................... TACAATTCTTTATCTGGGTACTTTACACCTTTA 59369 37 94.6 39 G........T........................... AAAATCAACGTTTTCTGTAAATCCATATTCAACCATTCT 59445 37 86.5 0 C.....................A...........TCT | T [59475] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.9 35 TAGTAAGAACATATCTCCGAATGTAGGAGACGAAAAC # Left flank : ACAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTGAGACAAAATTCTACTAGGGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATAAGGTGCAATTACTCTGTACTTACTTCCTAACGAAGTGAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAGGAAAACTGTTAGGAAACCTCAATTTATTGTGGTATAATACACTTACACGGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCCATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAGTTGTTAATATACCAACTAATTGATCAAAGAA # Right flank : TAATTTAATTAAAGTAGACAAGAGGAAGCGAAAATTAGAAAAAATAATATATAATATAGATAACTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCGTGTATTGGTGATACAGATCCTATAAGAAATAGACACGATGGAGCTTTATTACATTTAGTAAGGATATTTCGTCCCTCAAAAATATTATTAATATATTCTGAGCGTGCTTTATCAAAAGAAAATAATATTTTATTAGCATTGAATTCTATAGATGGATATAATCCTATGATCGAAAAAAGTGATGAAGTCATTTCTGATAGTGAAGTATTTATTTTTGATAAAATGTATGAAGTACTAAATGGAATAATTTCAAATTATTCTAAAGAAGATGAAGATCTAATTTTAAATTTGTCTAGCGGTACGCCACAAATGAAGTCAGCGCTATTTACTATTAATAGATTGAAAGATATCAATGTTAAGGCTTACCAAGTCGTAACTCCTAGTCATTCTTCAAATG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTAAGAACATATCTCCGAATGTAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 20079-21573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAF01000066.1 Ligilactobacillus salivarius strain 609_LSAL 242_21631_250303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20079 29 100.0 32 ............................. CCTTGGGTTGTATTAATTGCTGGTATTGCTGC 20140 29 96.6 32 ............................C ATAAAGGCTCACTAGTGTTGTTTGGAGATGAC 20201 29 96.6 32 ............................C CTGATGGCTTAAGTGAAATGATTATTGGTGGA 20262 29 100.0 32 ............................. ACTTTTCTAAATCTTCAAATGAAACTTCCTTA 20323 29 100.0 32 ............................. TTTGGATCGTAAACATTTCACGTAAGAATTCA 20384 29 100.0 32 ............................. TATCAACAAAGCCGTCAACAACCGAGGCAACA 20445 29 100.0 32 ............................. AAGTGTTTGTTGAGCGTCTGTTAAGCCTGATA 20506 29 100.0 32 ............................. TACGTCTTCCATACCCAATCTCTTGGCTAGAC 20567 29 100.0 32 ............................. TATCAATGTATGTTTTCCCACTACGAACAGCA 20628 29 100.0 32 ............................. ACAAGTCGATATAAACGAACTAAAGAATTCAG 20689 29 100.0 32 ............................. GTTGATGATAGTGCTGCTAAAGCTGGAGATGG 20750 29 96.6 32 ............................C ATACATTCTAAGGAGATGAGTTCAATGGCACA 20811 29 96.6 33 ............................A TATATACCAAGCTTTATCAAGGGTAATTATTAT 20873 29 100.0 32 ............................. TATGCTTGATTAAATCATGTAGTTTTAATAAA 20934 29 96.6 31 ............................A GGTAATCATTGAATTGTTACTGGCGCTGTCG 20994 29 100.0 32 ............................. ATATCGTGCTGGCAGTCGACAAAACATCATTT 21055 29 100.0 32 ............................. GCTAAGGGGGACAAATAACATGGTCATGTATA 21116 29 96.6 32 ............................A TCAAAATTAGTCATAGTCGCCAGTGTCAATAG 21177 29 100.0 32 ............................. AAGTGTATAAATTTCGCCTTTAATTACTGACA G [21199] 21239 29 96.6 32 ............................C GATCAGTGGCCGACCTTATCCAATGTTTATGA 21300 29 100.0 32 ............................. AATTCGTCTAGCTCTGATTGCTTCTAACTTAG 21361 29 100.0 32 ............................. AATGAAAAGCCATCACGGTTCATATAATAGAT 21422 29 96.6 32 ..............A.............. GATAGTGAAAAGACGTTAGCAAACGTTAAAGC G [21444] 21484 29 93.1 32 ..............A..........C... TTAATTTCAGAGATTACAGAAGGACATATTCT 21545 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 GTGTTCCCCATGTATGTGGGGGTGATCCT # Left flank : TTAGAGAAAGATAGTATTATATCAATAGGTGCCGTTAAAGTAGAAAATAATAGCAAGCATGACTATTATTCTCTTATTAAAGGTATAGAAGAAATTCCGGATGAAATCAGTGAGTTAACTGGTATAGGAATTGATGAATTGAATAAAGATGGTGAAGATATATATAAAGTTTTAAAAGTATTGTATGGGGTTTTAGATGATGCTATTATTATTGGGTATAATCTTAATTTTGATCTTAATTTTCTTAATAGAGAATATGAGCAATATACTGAACTTAAGTTAGTAAATAAGGTGATTGATTTACTCCCAATAGTAAAAAAACAGTGTCGTTTTTTAGATAATTATCGCTTAGAAACGGTATTGCAATATTTTGGTATAGAAAATTCTCATCCACATAATGCATTGGAAGATGCTAAGGCTTGTATTGAATTGTATGAGAAACTAATAAAAAACAAATAGTAGTAACTTCAAAAAGATCGATTTAATAGGGATATTTTACT # Right flank : ACCCTAGCCCTCCCCAACGATTAGAGTTGCCAGTGTTCCCCATGTATGTGGGGGGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //