Array 1 5941-4472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXX01000020.1 Pseudomonas aeruginosa strain AUS054 IPC340_20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5940 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 5880 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 5820 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 5760 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 5700 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 5640 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 5580 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 5520 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 5460 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 5400 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 5340 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 5280 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 5220 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 5160 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 5100 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 5039 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 4979 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 4919 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 4859 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 4799 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 4739 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 4679 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 4619 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 4559 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 4499 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 443843-444230 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXX01000003.1 Pseudomonas aeruginosa strain AUS054 IPC340_3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 443843 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 443903 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 443963 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 444023 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 444083 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 444143 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 444203 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAATAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6287-5002 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXX01000017.1 Pseudomonas aeruginosa strain AUS054 IPC340_17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6286 28 100.0 32 ............................ GCAATGAACGCCCATACCGGCGGCGCCATCGA 6226 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 6166 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 6106 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 6046 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 5986 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 5926 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 5865 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 5805 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 5745 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 5685 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 5625 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 5565 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 5505 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 5449 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 5389 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 5329 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 5269 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 5209 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 5149 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 5089 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 5029 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCTTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //