Array 1 1713924-1715079 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP020433.2 Streptococcus intermedius strain FDAARGOS_233 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1713924	    36	 100.0	    30	....................................	TAAAACCAGTGACATTCTCCATGTAGGTAT	
   1713990	    36	 100.0	    30	....................................	AGACGCCTTGTGAATCATCATTTGACTTGT	
   1714056	    36	 100.0	    30	....................................	ACCCCTAAGTTATAAGCGATAAGCCCTGTT	
   1714122	    36	 100.0	    30	....................................	TTTTAAATTTTTTGTTATAGGATTTAACTA	
   1714188	    36	 100.0	    30	....................................	CGCGTTTAGCTTGTCTCAGTAAGCGATAGT	
   1714254	    36	 100.0	    30	....................................	ATCATTGAGTTTTTCCAGTTGCCATACATA	
   1714320	    36	 100.0	    30	....................................	TTCTACCTAGACCATCAATAACCTGTTTTC	
   1714386	    36	 100.0	    30	....................................	CTTTTTCTCCAGCTAATTGAGTGATTTTTT	
   1714452	    36	 100.0	    29	....................................	CCTGTCGAAGAATTAATTCTAATTTTATT 	
   1714517	    36	 100.0	    30	....................................	TCCCTCTAGCACACGGTCGTAAGCCGTATA	
   1714583	    36	 100.0	    30	....................................	GTTTTTTTCCTATGGTTGCTATTGATGTAT	
   1714649	    36	 100.0	    30	....................................	CTATATCATCTGTAGTGAGTTAATGAATAA	
   1714715	    36	 100.0	    30	....................................	CATGCAATCAACAGGTCTTTTTGATAAAAA	
   1714781	    36	 100.0	    30	....................................	CATGCAATCAACAGGTCTTTTTGATAAAAA	
   1714847	    36	 100.0	    29	....................................	AACAGCTGTTGATGCAGGTGCTAGTCAAG 	
   1714912	    36	 100.0	    30	....................................	GATTGCAGGCGGGTTATATTTCCAAGCCTC	
   1714978	    36	 100.0	    30	....................................	TCCAGAAGCTCTTAAAGGGCCACTTCTCAT	
   1715044	    36	  97.2	     0	...................................T	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	  99.8	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAATTAAATGAAAAGCCTGAAGTGAAGTCAATATTGGAAAAGCTTGTTTCAACGATAACAGAGTTGCTTGCATTTGAGTGCTTAGAAAATGAATTGGATTTGGAATATGATGAGATTACGATATTAGAACTGATTGATGCTTTGGGAGTCAAGATTGAAACGGCTAGTGATACCGTGTTTGATAAAAGCTTAGAAATTATTCAAGTTTTTAAATATTTATCGAGAAAGAAGTTGCTGATTTTTGTGAATGTGTCGGCTTACTTCTCCGAAGATGAATTGGTCAAATTAATCGAATATATTGAATTAAATAATATCAATGTTTTGTTCATAGAGCCAAGGAAAGTTTATCAATTTCCGCAATATGTCTTGGATCAAGACTATTTCTTAAACGGCGAGAATATGGTATAATAAAAATGATAATAAAGAGCCATTTGATCTGAAGTCTAGCTGAGACAAATAGCGCGATTACGAAATTTCGAGACGAAAATTCGTCTACGA
# Right flank :  TATATATGCAGTTTTTTTAATTATTCACAAAGTATTACTCTTTCTTCAAGAATTTTTTAGTGAAAAATGCTACAATTAGATAAATAAAGAAAGGGTTGTCTGTATGGAACATAAAAAGAAGGATTTTAGCCTATCATGGTTTTTTCGATGGTTTTTGGATAACAAAGCAATCACCGGTTTTTTGGTGACTTTATTATTGGGGTTGAATATTTTTGTATTAAGCAAAATTAGTTTTATTTTCCTTCCTGTCTTAGAATTTATCGGAGTTATTATGCTGCCAGTTATTCTAGCGGGTCTTTTGTATTATTTATTAAATCCAATTGTTGATTTTATGGAAAAGCATAGAATCAACCGCTTAGTCGCGATTACGATTGTCTTTATTTTGATTGCATTACTTTTAATTTGGGGATTAGCTGTGGCTATTCCGAGTTTGCAGCATCAGATAGTTAGCTTTGCAAAAAATTTGCCAGCTAATTTGAAAAAATCGAATAAAATTATTC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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