Array 1 27712-28406 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOX01000014.1 Lapidilactobacillus bayanensis strain 54-5 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27712 36 100.0 30 .................................... GCCGATTAGTGGCAAATACGAAGAGTTATG 27778 36 100.0 30 .................................... GATCTTATTTCCGAGAGTGCTTCTGCAAGT 27844 36 100.0 30 .................................... CATCATACACAATCGACAACGTAGTCAACG 27910 36 100.0 30 .................................... GCGTATATGTACAACGAGAGCAATAACAGC 27976 36 100.0 30 .................................... CGTTGCGACCACGTAGCGCCATGAAAGGAG 28042 36 100.0 30 .................................... CCTTACTCTCTTTCTTGTCGAAGTTTAAAG 28108 36 100.0 30 .................................... TTATAGAAAATTATTAACCTGTCATTAGTT 28174 36 100.0 30 .................................... GATTGAAATTTGCTAAGGCGTACTGTTCAC 28240 36 100.0 30 .................................... GAATCAAACCACCGATCAACGATCAGCCAC 28306 36 97.2 29 ...................................T TCTCTAGTTTATGATAAAACTGATTGGCA 28371 36 97.2 0 ......................G............. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GCTATTGATTCCTTCAGTTTTCAGCTAAAATAGATC # Left flank : TGGCCACTGCAGGCGGCCATTTTCGATTCGTTTATAAAGTAAGAGAAAGCCATCACCGGCCCAATATAGGGCCTTAAAACGATCTTTACGGGTACCGCAAAAAAGAAATAACGCCCGGCTGTAGGGGTCAAGTTCATACTGATCAGTGATCGTAGCGGCTAAACCATCGATTCCACGCCGCAAGTCAGTTTTGCCACAAATCAAATAAATACCCTTGAGTTGGCGTAAATCAATGAGCATCAGTGAACACCGCCTTGACTAGGGTGTCTAAAATATATCCATTGATATGATTGTAAACAATGATTGTTTCGTGTTCATTACGTTTGATTTGAAAGGCCTTTGATTTTGGACTTGGCTGTCGTTGACCGTCGTCCAGCTTAACTTGAACGATTTCCGGTTTATTGAGCATAAAAACACCTCACCATTTCTTATGATGAGGCTATCATACCGCGGCCGATACGCTATTTATAGTCGGTCTGTTATTGGGTGCTTACATTAAT # Right flank : CAGTGTATCAAAAGAGCCCGATATCACGCGGATACCAGGCTCTTTTGCTTGTCTAAAAAGTGGTCATCTGCCCACCGTCTAACTTTTCTTCATTAGGCAATGGATCACCTACTAACAGACGCATTTCGTCGAATTGTTTCTCGGTTATAACTAATAATCTTACTGACCCTTTTTCGGGCAAATTATCGTCTAGCCGCAGCTCGTATTTTTTAGACATATCATAGCCATTAACGATGCGATAATAAACCGAGTATTGCATCATTACGTAACCCTCACTCAATAAATACTGCCGGAATTTTGCCGCTGCGCGACGATCTTTTGCTTTTACAACTGGTAAATCAAACATGACTAATAGGCGCATATACTTACTACTCATACTCGTGCGCCACTAAGGGAATCAGTTCCGGCAACTTCAACCCTGCAGCAGAATTATTACGACAACAAGTCGTGTACGACGATACTACTTTATGAACAGCATTGCTCAACGAATGAAATTCTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATTGATTCCTTCAGTTTTCAGCTAAAATAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 35598-33186 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOX01000014.1 Lapidilactobacillus bayanensis strain 54-5 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35597 36 100.0 30 .................................... AATGAGCGTTCCATGGTGCTTAGTGGTCCA 35531 36 100.0 30 .................................... TGTTGGCATTCAATGCTAGGATAGCTGAAT 35465 36 100.0 30 .................................... CACTGTCAACATTTCCAACCTTGTATCTCT 35399 36 100.0 30 .................................... CAACAAGTCGAACAGGAACATTGAGTACAT 35333 36 100.0 30 .................................... GCCGATAGTCTTTCTCTTTTGATACTCGTT 35267 36 100.0 30 .................................... TACCGGTAATGTTTGCCGCTAACAGCATTT 35201 36 100.0 30 .................................... ACCTATATTTTGCGTTTCCACTGATTTTCA 35135 36 100.0 30 .................................... AGGCGGACTTGATGCTGTCAAGAAACTGAA 35069 36 100.0 30 .................................... ATTCGGACCACCGACTGCCGATCGTGAATG 35003 36 100.0 30 .................................... CGCGATGTTAAGTCTGATCGTGATGCGAAA 34937 36 100.0 30 .................................... CCAATTCAAGGACTATGATCAGCTTAAGAC 34871 36 100.0 30 .................................... TACTGTGACGCTGAATTGGCTAAACCTAAA 34805 36 100.0 30 .................................... TATATTACGTGACTATCCTAATTTAGATAA 34739 36 100.0 30 .................................... CCAAGCACTCGATGGTTGTTGAAATTTCAA 34673 36 100.0 30 .................................... TGTTCTTGCTGTGGCATTTCACTGTTAATA 34607 36 100.0 30 .................................... CCAAATTGCAAACACGCCCATGACAACATA 34541 36 100.0 30 .................................... TTCCAAGCTTCAAACAGGTACAACCAAATC 34475 36 100.0 30 .................................... AATCAACTTAAGGCGGTGTACATATGTTTG 34409 36 100.0 30 .................................... AGCGCAAGCGACCTATGAGCGTAATCAGCT 34343 36 100.0 30 .................................... GAAGGAACACGACAATGGCAAAAACTATAC 34277 36 100.0 30 .................................... ACCTGTTGCCCAGGTCTTAGCAGAGAAGTT 34211 36 100.0 30 .................................... AATTGCGAACGCAATGCTTAAAGTTGAATA 34145 36 100.0 30 .................................... TCAAGTACTCAGTGTATTCTTTGAGTTCAA 34079 36 100.0 30 .................................... TGATTGCGATTGAATAGTTATTTCTCACAT 34013 36 100.0 30 .................................... ACCTAAAATCAGCACTAAAAATTCATACAA 33947 36 100.0 30 .................................... ATTCCATACCCAAATGATCTTGCATAGCTA 33881 36 100.0 30 .................................... TGTCTCCCTCTTTATACTTCTTCATCAATA 33815 36 100.0 30 .................................... TGGTGTTCTTAACTCCTTTGGCTTTAGTAG 33749 36 100.0 30 .................................... TCTCAATTTCAAATGTTTTTCTGTAATCTA 33683 36 100.0 30 .................................... CAGAGTTGCTGAGTTCATGCATTTCTGCTC 33617 36 100.0 30 .................................... GGATGAAACTGGTTTAATTGCGTTAGTTAA 33551 36 100.0 30 .................................... TCAGTAATATGGTTTAATTTACGTTGTTTG 33485 36 100.0 30 .................................... ATCACTGAAGAAGTTTTAACAGATGTTAAA 33419 36 100.0 30 .................................... CTACTGCTTGATATGGGGTTAGGTAAAAGC 33353 36 100.0 30 .................................... TACCGTTACTGCAACATTCGTCTCTTGAGC 33287 36 97.2 30 ...T................................ TGTCGCTTGCATGACAGTACCCAAATCTTC 33221 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.9 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GTAGTACGGTTATTCGTGATTACATCACTAACCAAGGTGGCACCTACACGATTCCACCAAGAGAATCGGCATTAGCACCATGGACAGTTGATTGGTGGGTCTATAAGGAGCGTCATTCAATTGAATGTTTCTTTAATCGCTTAAAGCATTTTCGGCGTGTTGCGACAAGATATGATAAGACGGCTTATGTTTTTCGTACGTTTATTCACGTAGCGGCAATTTTGTTATTACTTAGATAATTTGAAGACACACCCTAATTTGTATATGAATTTTAACTCATATTTAATAATTTGTTTAGATGGGTAGAATGAAGTAATGTATAATTGCCCTGAAATTAACCAAGGTAGTTTATGAGTAATTGTTATTTAGTTAAGCATGGATACTGACTTTTCAACATTGTAACCACTAAGAAATTACCAAATGAGTTGAACTGTTGTCCATTTTTAGGGCAAATGAAATAGCTTGATATACGTGAGGTATCAGGCTATTTTAGTATACTG # Right flank : AATATTGGATGTTGCGCGGCATAGCACCTTGATTTATTTTAGCCAAAAATTTGCCATAAATAAAATTTATCTTACAATCATCTTTTGCAACCGCCATCATTATGCTAAACTGAAGTAAATTAAAGAGATGGAGTTGATACTATGGGCTATCGAATAGGCTTAGATGTGGGGATTGCGTCAACTGGTTATGCGGTTTTGAAGACTGATAAAAATGGATTACCATATAAAATTTTAACACTGGATTCAGTGATTTATCCACGAGCCGAAGATCCACAAACGGGAGCGTCATTGGCAGAACCGCGGCGGGTAAAACGTGGATTGCGGCGCCGTACGCGGCGAACCAAGTTCCGTAAGCAGCGGACGCAGCAATTATTTATACATAGCGGTTTATTGTCTAAATCTGAGATTGAACAAATCTTAGCAACACCACAGACCGAATATTCGGTCTATGAACTTCGGGTAGCGGGCCTCGATCGTCGGTTAACTAATAGTGAATTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2086-1322 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOX01000018.1 Lapidilactobacillus bayanensis strain 54-5 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 2085 30 100.0 37 .............................. TCATAAGCCATCATTAACGTGCTCAAAGTCGGAGCAA 2018 30 100.0 36 .............................. AATGTTCACGTTCTGCGTGAAATAAGCCGACCAGCG 1952 30 100.0 37 .............................. TCGAATCACAGGCTAGGTACTGGGACAACCTTTCTAG 1885 30 100.0 36 .............................. AATTGCACGTTCGGGGCGTGAAACTCGCTCAACAGA 1819 30 100.0 35 .............................. ATCCATAGAGGCGTGGACGCTGTTCGCTGGTCTAA 1754 30 100.0 36 .............................. AATTCTGACTTCTCGGGCGTATGACTAACTAGCACC 1688 30 100.0 36 .............................. AAAATTGACGCTACTTTAGCATTACCTTCTGCAATT 1622 30 100.0 36 .............................. GCCAATGCTGGCTGAAAAACTAAACGTAAGCCAGAG 1556 30 100.0 36 .............................. TCAATTAAGCTCATCGGGTACAGTCACACCAACCGG 1490 30 100.0 36 .............................. CCTCTGCTTGGTTTGGGCAAACCGTAAAGCTCTCTC 1424 30 100.0 44 .............................. TCAGGATTTGGCTCATTTGATCTAGTAGCATTAGGTTTGATACA 1350 29 80.0 0 ..................A.-.G....TCA | ========== ====== ====== ====== ============================== ============================================ ================== 12 30 98.3 37 CTTTTAATCTAAAGAGTATTGAATGTAAAT # Left flank : AATTGGCAAATGTTGATTCCTAGGCTTTTTGCTTGCCTATAATCGGATAGAAAAGAGAGTAATTTTGTAGGTGGGTAAGCAGTTAATAACGTAAGCAGTTAATAACCGACCGTCTGTGAAACACGACCTATTCAAGGTAAAATTACCTCATCATAATAAATGGTGAGGTGTTTTTTATATGGCAAACAAACCTGATATCGTCCAAATTAAATTAGACAACGATCGCAACTCGCTTCCAGACCAACCAACAGAGGTGACGATCAAAAGATGTATTCTGGATCAAAGGAAGAATGATATCGCGATGGAAATGATCCAATGTTCTGTTCTGTCGATGTACGATACCGTTGATTGACGTGGAGATCGACAGATAGGAATAATGCTGATAAAATGATACATGTAGTAGAGTTAAAGAAATATTCTCAATATTTTTTATAATTTTTGTTGTGATGGACAGATTCTGCTACTTGAACCCTTATCTAATGCTATGAAATCTATGTGGT # Right flank : AACCTAATGCTACTAGGTCCTAACACAAGAACAACAATGCTCACAAAGCAATCTTTCAATCAGTACCATTCCTTGTCAGAGATAAAATCAAGTCGACTACGATCACGTGTCAATAAACGCTTATTGAAATGCCTAACGTACCGTTCAAGAGAAATTTACATTTAGCAATCGGTGTACAGATAATCATCAGTTCATATCATTAACGGAAGCTCTGCTAAGAGTGGTAATATCACTAATAATGATAATTCGATGCTGGATATCAAGGTGAGTTATGCAGGATAGTTTGTGCGTAGCGTGAGATTATCTCGTCAGTAAAGATTATCAATAAAAAGCAAAAAGTAGAGTTCTATTGTTTGACCTAGTTTGACTAATGTGTTAAATTAGCAAAGTAGTTCTTTGAGTGCTAATATATTGGTGCCGGACTAAACTTATTAGATATGAAATTAAGGAGGCAATACTATGCTAGTGCCAACAGTTATTGAACAAACATCTCGTGGCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCTAAAGAGTATTGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //