Array 1 15505-16134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAK01000129.1 Porphyromonas gulae strain COT-052 OH3439 contig_129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15505 36 100.0 30 .................................... AACTAAAGCTTATTCTAAAACTTATAGACG 15571 36 100.0 30 .................................... GAAAACAATGAACGATAATTTTTCAGAACT 15637 36 100.0 30 .................................... ATCTATCTGCAAAACCAGGATTCAGAGGCT 15703 36 100.0 30 .................................... AAGAGGCATGAATGTACTATCCCTATTTGA 15769 36 100.0 30 .................................... TACGCAAAGGCCGGAGATAAAATACTTGAC 15835 36 100.0 30 .................................... AATCCCTGGGTATTAGAAAATGTTGTTCCT 15901 36 100.0 30 .................................... AACTAAAAGATGAGTTGATTGGACACGACT 15967 36 100.0 30 .................................... CTCGTTATCACATACCCGATGGAGCTCGTT 16033 36 100.0 30 .................................... ACTAACAAATTATGAAAAAATTAGTTTTCA 16099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGCGGAGGTATAAATAAAGAGGCACCCGCCAAGTTCGAGCACGAACTTGGCGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAATGCCGGTATATAACCACACAGGCCGAACGAAACCGGCCGGATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1542-5647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAK01000070.1 Porphyromonas gulae strain COT-052 OH3439 contig_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1542 30 100.0 34 .............................. TGGTACAGCCCGTTAGTGTCGTTGAGATGGCAAG 1606 30 100.0 37 .............................. TTCAAACAATTACCTCTATGACAAAAGATAGAACCAT 1673 30 100.0 35 .............................. AAGGGCGTTTCGCCCTCTGTTCTTGCAGAAAAGAC 1738 30 100.0 36 .............................. AGTCTGCTTCTGTAGTCTTCTTTAAGAGATTTGTAT 1804 30 100.0 36 .............................. AAGACGGCGTGATAGATTATAAAGAAACGACCCTCG 1870 30 100.0 35 .............................. CGACAAGGTGCGCAATGCTCAAGAGCTGGCCCAAA 1935 30 100.0 35 .............................. AACCGATGACCTCAACGGCCGCGTGGACGATCTCG 2000 30 100.0 36 .............................. TGTCTCGTAGTTCTCTTCGCCACTCGTTCGAGGCGT 2066 30 100.0 36 .............................. TACTGCGAAAGGATTCTGCCATGGCTCACTTCATGA 2132 30 100.0 36 .............................. TGCGAAGCGGAACAAGAAAAACATAAAAACTCGGCA 2198 30 100.0 36 .............................. ATATCAGATGAGGCTATAAGAAAGAATTACTACAGA 2264 30 100.0 36 .............................. CTACCTTGAATTGCACCAATTCGCTCACTCTCGCAC 2330 30 100.0 36 .............................. TATATCAATTTTCGTGACCGTCATTTCGTAACTGAT 2396 30 100.0 36 .............................. CCGGTGCGGATGTCGATGCACAACCCTTTCCGCTTC 2462 30 100.0 36 .............................. CGAGCGTGAACCCTGCCTCCAGCAGGGCATCATGAA 2528 30 100.0 35 .............................. GAACTACCTTCGCTGAGTCTATAATCCCTTCCTCA 2593 30 100.0 36 .............................. AGCATAGAGCTCAATGGATGTTGTTTTACCAACCCC 2659 30 100.0 36 .............................. TTAGTGCAGACTTAGTAGCCAAAATAGAGTCTTCAA 2725 30 100.0 36 .............................. CCGGAGAGGGTACAGAAACGCCTATTACTACTGTGT 2791 30 100.0 36 .............................. CCAATACTGTTCTCAAACTTTCCAATATTGTTCTTA 2857 30 100.0 36 .............................. CATCGTTATCTGAGTTATGCCCGAAGTCGTTATACG 2923 30 100.0 36 .............................. TGGGTGTGGTTATATCTATTGCGTGTACGACATCTG 2989 30 100.0 36 .............................. TCCATCCGTTTCCTAACATTTTGTATTGCTGGGTTT 3055 30 100.0 37 .............................. TCCCTGTTGTACGTCTCGCGTATGCACTCCCTCATCA 3122 30 100.0 36 .............................. CTCGGATTGATGCGTGAACTCTGTTATCACGCGCTT 3188 30 100.0 36 .............................. ATTCGCCATGTCATAAAATATGGCAGCTATCTCTTC 3254 30 100.0 35 .............................. CCACGCACAGCCCATTCCACACTATCTTTTACGTG 3319 30 100.0 36 .............................. CCGAATTTCCGGTTTGTTTGATGAGAATAAGTTTAG 3385 30 100.0 36 .............................. GTAAGAGAAATATAGAGCATTTACGGGATGCTGTAA 3451 30 100.0 37 .............................. TCAAATTGTCAGAAAACCGCCCTCCCACCGAAAACCG 3518 30 100.0 37 .............................. CACAAGTAAGGTCTCGCTCGGGACTTGCTCTGAAGAA 3585 30 100.0 37 .............................. ATCCGGGGAGTGCAGGAATGGACTTGCGAGCTGATAT 3652 30 100.0 36 .............................. GTTATGACCTATCTGCGTCTCTATCAGTCGGACGAT 3718 30 100.0 37 .............................. ATTACATACCAGAAACTCTCAAACACATTATTCAAAA 3785 30 100.0 36 .............................. ATCACGCTCAGACAGTTTATAGCCACATTCACAAGT 3851 30 100.0 35 .............................. TCAAACTGGAATCATACGAATAGCTTATGATGTAA 3916 30 100.0 36 .............................. CCTGCTTCCCCTCAGTTTCGCCATCGGCGTTTCCGT 3982 30 100.0 37 .............................. CTTGCTTAACACAATCAGCTACTATTTTGCCGACTTC 4049 30 100.0 36 .............................. GAAAGGATGGTTTGGTAAAGTTGCCAAACTCGCAAG 4115 30 100.0 34 .............................. CATTCACAAGTAGGCCAATTAAAATCACCAATCC 4179 30 100.0 36 .............................. CAGACAGGAGATGGACATGTCTGTCCGAGACCTGTC 4245 30 100.0 35 .............................. TAATGAGCTTCCGTCAGCTATGCGAACGCAACCGG 4310 30 100.0 35 .............................. GGCGTTGAAAAGCAGCTCCGCGGTCTTTGCGCTGA 4375 30 100.0 35 .............................. TGGAGACCTTTTGTTATAAAAATTATACAGAATTT 4440 30 100.0 35 .............................. TGAGGGTGAAAGTAAGCCAACACATAGAATCAGAT 4505 30 100.0 36 .............................. CCACACACTTCCCAATAGAAGCAGAATTATCTCCCT 4571 30 100.0 35 .............................. TATGCTCTAATACAGCAAAGAATAGAAACAGAATA 4636 30 100.0 36 .............................. TTATGCAGACTATTTAGGGGTTTCTAAATGGATGAA 4702 30 100.0 36 .............................. CAAGGACCAAATAGTGACACAGAGAAAGTAAAAGCT 4768 30 100.0 36 .............................. TAATATACCTCTTGGATAGGTTGAGTATTATGAAGT 4834 30 100.0 35 .............................. AAGCCAAGAGCGGCTTCGAAGTATCATCTACTCGA 4899 30 100.0 36 .............................. AGCTGAGTGTCGCCAACCGGCCGGGCAAGACCTTCA 4965 30 100.0 36 .............................. CTGGAGAAAATAGATACCAGTTGTCAGCTCGATACA 5031 30 100.0 36 .............................. GATACTTCGCATCGCTCTTCCCGTCAATGCACCGGC 5097 30 100.0 36 .............................. CTCTTTCGACCGCCTGTTCACGGCGCTGTTCTTCGT 5163 30 100.0 34 .............................. CAGTGCGGAACGAGGCAGAACGGCTTAGAATATA 5227 30 100.0 37 .............................. GGATAGACCTCTTATGGCTGGATATATGACCCTTGAA 5294 30 100.0 35 .............................. CACACACTTCCCAATAGAAGCAGAATTATCTCCCT 5359 30 100.0 34 .............................. ATGTTGTATTAGTTGTCACAAACTTGCCTATGAT 5423 30 100.0 34 .............................. AGTAATATTAAAGTTTCAGATGTTTCTCTACTAC 5487 30 100.0 35 .............................. GATAGGATTAAACAATTAGTTGATGCGGGACTTTA 5552 30 100.0 36 .............................. TTATCACAGAAGCTCCCTTATTGGCAGGTATTCTTA 5618 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 63 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CCGTTTTACATCATATAGAGAATCTCCTGAACGAACTTTTCTTAGCCAAGATTGGATAGAGCTTCTGCTCACATCATATCGGAGACATAACTCTCGCAAAGTTACACCATCCTTGATGTGTTCCAAAATAATTGCTTCTTTTTCTGTAGGACTGAAGTCATATCCTTTGCTGGGATTGCGAAGACCTTTTTCTCCATAGGCTTTATAACGTGTTAACCACCAACGAACCAAATGCCTGTCTAACCGACGCTCCCGGCACACTGCACTGAGACCTTTTCCCGCAATTATTTCACTTATGACATTGAACTTCTCTGCAAAACTATACTTCATAAATAAATTACACCCCAAAAGTTTTATGTCNACCTTTTCCCGCAATTATTTCACTTATGACATTGAACTTCTCTGCAAAACTATACTTCATAAATAAATTACACCCCAAAAGTTTTATGTCTAACTTTTGGGGTGCACTTCAGGCTTCCTGTAGAGCTTTGAGTATGTTT # Right flank : TCCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCAAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 52737-52323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAK01000070.1 Porphyromonas gulae strain COT-052 OH3439 contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 52736 37 100.0 41 ..................................... CTTCAAATCCTATAGGATCGTATGTACAAGCTGGAATTACT 52658 37 100.0 36 ..................................... CGCGCTTTTTGCAGGGAGTTGGTTCAGCAAAAACCC 52585 37 100.0 38 ..................................... TTTGACTGTGGTCCATTGGTCATTAACCCAAACAAGGA 52510 37 100.0 38 ..................................... TTAAAGCAAATGTGAATGTAGAAAAGCTTCAAGTAAAA 52435 37 100.0 39 ..................................... AAATGTATTTTACAATTTTGCCACAATGATGAATGGTGA 52359 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 100.0 39 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : ATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGCGGCGCGAGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAAGCTGTGATTATGTGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACATGGAAAGTCCAAGTGATGATGAGTAGAGCATAAAGA # Right flank : AACTTGAGTGACTGCAAGTTACGAATAATCCCAAACGTAACGCACTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAGTTGAGAAATGCAGCTATAACATCATTTTTGCCATTGAGATGCTTATATCTCATTGATATACAATCAGATTAGCTGATTTTCCATTTTCGAAAATCAGAAAGTGGGAGCCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACACCCCTGTTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACGGGAGAAAAGAGTCGTTTTTGCAACCGGCTGATAATCAGTACGTCAAAGAGCGATGCGTGGTTCGAGTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTCCTCCGGCTCTTGGGTGGGGTCGGATGTCCGCTCATCCAAGCTGCAGCATAACAATGCTGACAGAGAGGAAGAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //