Array 1 891718-891462 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019841.1 Leptotrichia wadei strain JMUB3936 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 891717 30 76.7 45 .......C..A......TT....TAA.... AATGTGTATATTACGTGTATATTACACAAACACTCTCTAATTTTT A [891702] 891641 30 100.0 48 .............................. CAGCAGTAATTGGGCATACTAATATTGAAATGACTAGAAAATGTTTCC 891563 30 100.0 42 .............................. ATCTATTCAATAATGATAATTACACTCGTTATGAGTGTTTCC 891491 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================ ================== 4 30 94.2 45 GTCTCCTTTCGGAGTTCAATTCTCTTTTAT # Left flank : GGCTTACAATTCGCCATTAACGAATCCGATTTAAAAGAAATAGCCGACAACCCAATAAAAGGCAAAAATTTCCTTGTAACTGGAAAACTCCAAAAATACAAACGAAACGACATAAAAGACATCATCCTTTCTAAAGGCGGAAATTATCTGTCAGCAGTTTCAAAAAATCTAGATTTTCTAATTGCTGGGGAAAAGGCTGGAAGTAAGCTGGAAAAGGCTGAAAAACTGGGGGTTCGGGTGCTTACGGAGGAGGAGTTTGAGAGGGAATTTTTGGAGATTTAGTCTTTGATGCTTCTAAAATTATAAAAGAACTATATTGTTATATTTATAGTTCTTTTTTTATTTGATTAATTTTATAGTCTTAAAATAATTTTATCCTGAATATAACCCATCTCTTTTCTTTACAATTAATCAAAAAAACATTTTATATTCCATCCCCTTTCAAAATTTTCTTTTTAATAAATTTATGACAATATAAAATAAGCCTTAAAAAAATTTTA # Right flank : CCTCCCCAAATTAAACCCTTATTTTATCATATATTATTTTATTATTTTCGTGAGAATTTTAGAAATCTTTATATTTCTCTTCCTTAACAATAAAAAATATACTCTAACCCCCATTTTTAAAGTATCGTGGCGATTGCTAAAAAAAATAATAATCTTCGTTTTCAATTTCATTTAATTCGCCATAAATTACTTTTTTTACATTCTGATTAAGCCTGTAAATTCTTATTAAATCTCCTTCTTCTGCAAATTTTTCTATTTCTTTTAAAAGTGTTTTACATTTTTCTCTAGTCAATAGACACTCAAAAGCAGACCTTTGTATTCTATTTCCATAAGAATTTAGAAGATTTTTAAGAAAAGCTCTTCTCTTGTTGTCTATAATATCATAAATTACGACAACTGTAAAGGTATCTTCAAAAAATTCATGACAAAAATCTTCATCTAAAAAATCCCATTCATCCATTTTACCATCACCTTATTAATATCGAACTATATAAATTTGG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTTCGGAGTTCAATTCTCTTTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 1079464-1080324 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019841.1 Leptotrichia wadei strain JMUB3936 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1079464 37 100.0 37 ..................................... AAAATAGAAGCCTCAACATCTGTGATGGGTTCATGTT 1079538 37 100.0 39 ..................................... ACAATAAAGGAAGATTTAATGCTAAAAAACTTTATTATT 1079614 37 100.0 40 ..................................... AGACGGCGAACTTGCTACCTTAGAAAACTTAATTAAAGAG 1079691 37 100.0 38 ..................................... CTGCTAGCTCTTTTCCGAACCACATTATAAAGAGGCTG 1079766 37 100.0 41 ..................................... CTGTAAGTCCAGTCCTTTATTTCTGGATGTTTATCTATAAT 1079844 37 100.0 37 ..................................... TTTTCTTAATGTTCCCAGTTACATCAAATTTCATTTT 1079918 37 100.0 38 ..................................... TCTATGATAACATCTTTGATTAATCCTTTCTGTGGGTT 1079993 37 100.0 38 ..................................... AATGGTGTATCTAATCTGGATTTCTCCATATATATCAC 1080068 37 100.0 36 ..................................... AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT 1080141 37 100.0 36 ..................................... AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT 1080214 37 100.0 37 ..................................... AGTATTTGCTTTATTTAATATTCCATTTATAGAAGAA 1080288 37 91.9 0 .............................T..A...A | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.3 38 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : CAGTAAAAGAATTTCCAAAAAGCAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAAATATTTTCATCTATGAAGCAAAGTTACTGGAAGCAGATTTGAAGAAGGATACTAAATTACAAAAGTTATTTTTATAAATTTTCTAGCAAGGGGTCAAGACCCCTTGTCAATAAATAAAATGTAAATTCTGTTTTTTAGTATAAGTCTAGTGTTAGTATCTTTTTATTTAAGGAAATAAATTTTGATAATAATTTTTTAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTTGTAGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGGGAAAAACCTATTCAAAGCCAATAAATATGCACGTTAGGAGTTACGGAAAATGTCAAAAAAACAGCAAAAAATGATAAAAATTAAGCAAAAAAGTGCGATTTTAATGTCTGAAAAAATCTCTATAATACTGATAAATAAAGGATTTTCTCAAAAGTACGG # Right flank : AACAACAACTTTTTTATAAGGTTGTTTTTTTTTTTAGGAAATAAAATAAGGGGTTGAAAAAAAAGTAAAAATGTGTTATTATAATTGTAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAAATGAGTTTGAGAAGAAAATCGAATCGCATTTAAAGGAAATGAATCTGGAGTTAGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGAGTGTATGTGGAGAAAATGGATGGAACTACGACGCTTGATGATTGTATTGATTTTAGCCGTGAGATTGACGGGATTGCGGATGAACTGATTGAAGAGAAGTTTTTTTTGGAGGTTTCGACGCCTGGGGTTGAGCGAAGGTTGAAAAAGCCTAAGGATTTTGTGAGATTTTTAGGGGAGAAAGTTAATGTTCAGGCTAAGAGTAATATTGAGGGGGCTAAAAGATTTGTTGGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 1501741-1501556 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019841.1 Leptotrichia wadei strain JMUB3936 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1501740 37 100.0 36 ..................................... CTGATTTAGAGAATTTAACCATACCTTGTTCTAGAG 1501667 37 100.0 38 ..................................... GTATTCAGTATGTAGCAAATCTAATTTTTTAACAAGGT 1501592 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 GTTAAAGTAGAGTATCCATTAAAATAAGGGTGAAAAC # Left flank : AAAATACTAGTAGTTATTGCAGTGATTACTGGAGGATTAACTGGATTTTTGCTGGTAAAGTTTATTCAGAAAAAATTAAAAGATAAAAATGAAAACAGATAGAAATTGGAAGTGTGATACTAAATTTTATTTAAAAACTAAAATATTTTTAATAATAAGGGGCTTGTCCCCTTGCTGAAAAAATTCATAACAAATACACTATCCAACTGAACGGCAATAGAAGTTCGGCAATAGAAGTTATTTATACAAAAAATCAAAAAAAATTTTGAAAAATCAGAAAAATATGGTAAAATAAGACTGTGGAAAAAATTCCTACCACTATAAGAAATGAAAAATAAGAAGAAAAATCCACTCAAAGTCAATAAAAATGAGTATTAGGAGTTACGGAAAATGATAAAAAAACAGCAAAAAATAATAAAAATTAAGCAAAAAAATGTGATTTTAATATCTGAAAAAATCTTTGTAACACTAATAAATAAAGGATTTTCTCAAAAAGACGG # Right flank : AACTTTTTTATAAGGTTGTTTTTTTTATTTATTGTCAAATATGAGAAAAAAAGCAAAAAAAAACAGAGAGTCAATACAAATTTTGTATATTCTCTCTATTTTATTTATCATAAATTGTATAATTTCAAAAAAGATTTTCAAAAACTATCTTGAGTAAACTTTTGTTAATTTAGCGATTCTTTCTGCTAGTTCATCAGTTAATACGCCTTCTTTTAATCTCCATTGCCAGTTTCCGCTAGCAAGTCCAGGAGTATTGATTCTAGCTTCACTTCCTAATCCTAAGAAATCTTGGATTGGAACGATTGCCATGCTTGCGACAGAGCTCCATGCACCTCTTATTGCATCCCAATGAATTTCATCATCAGATCTTGAGTTTAAATAGTCTCTTGCAAATTGCTTATCGTTTTCATTGGCTTTTGTGAACCATCCGATTAATGTGTCATTATCGTGAGTTCCTGTATAAACTACACAGTTTTTTGTGTAAGTATGAGGCAAGTAGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGAGTATCCATTAAAATAAGGGTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 2149612-2149054 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019841.1 Leptotrichia wadei strain JMUB3936 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2149611 37 100.0 41 ..................................... CTGTAAGTTATATGAGATATTGTGAAGAACAAAGAATGACG 2149533 37 100.0 37 ..................................... TAATTCTCAAACTCCATTATTCTATCGAAGACCGTAA 2149459 37 97.3 36 ........................C............ ATCTTTTAGCATCTCTCTGTACTTTCTTGAAATAGT 2149386 37 89.2 37 ......G....A............C.......A.... GAATCATTACTAATAAGAAAAAAGAAATTTCAAAACC 2149312 37 100.0 38 ..................................... AATTCTCTTAATTCGCTTTCTAATTTTCTGTTTGAATA 2149237 37 100.0 38 ..................................... CCCATCTTGATGAATCGGAGGATTATTTTTTTCTAAAT 2149162 37 97.3 36 ......G.............................. TCAATTATAAATGCCGAAATATCTATATTATATTTC 2149089 36 83.8 0 ......G............C....C....G..-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 95.9 38 GTTAAAATAGAGTATCCATTAAAATAAGGATTGAAAC # Left flank : CTCAAAATATAAAAAAAGGAACTGAAGAAGTTTTTGAAAAAACAGTAGAAGGTGCAAAAGACTTGGCTAATAAAGCAGCAAATAACAAAATTGTTAAAGATGTGGAAAAAGGTGCTGAAAAAGCAGTAGATAAAACTGTAGAAGGAGCAAAGGATTTAGCTGGCAAAGTTACTGGAATGTTTAAAAAATAGTTAAAACAAAAATGTAGCAAAAAGAAATTATTTGGAGTATCAATTTTGGTACTCCATTTTTTAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTAAAATAAGTTTGCAGTAAAAATTCCTACCACTACCAAAAATAAAAAAATCAGGGAAAAATCTATTAAAAGCCAGTAAAAATGCAGGCTAGGAGTTACGGAAAATGCCAAAAAAACCGCAAAAAATAACAAAAAATAAGCCAAAAAATGCGATTTTAATATCTGAAAAAATCTCTGTAACACCGATAAATAAAGGGTTTTCTCAAAAATACGGGA # Right flank : TATTCGTTAAAAACAACAACTTTTATATAAGGTTGTTTTTTTTATTTGTAAAAAAAGATTTAAATACTTTAATCCATCAAATTTTTAAAATGTTTTGTTATTTTTGGGAAAATTTGATATAATTTATGCAATAGGAATTGGATTTTGGGTGATGAATTTGAGTAATGAATAAAAAATATTATGTAAAGTCAAATTTGGAAAGGAAATTTTGTGAAAAAATTAAAAGACTATTATGACAGGTTTAAGAATTTGAATCCGCAGTATTCGGGAATAAAATTGGGGATTATTGTTGCAGTTGTTGTTTATTTTATTGCAAGAATTTTTTTTGTGGTGGAAATTTCAAGGGATATGATAATTTCACTTGCTGTTTTTGTAATATCAATGACTTTTCATGAGGTGGCACATGGATATGTGGCTTATAAATTTGGGGATAATACGGCAAAAATGAATGGGAGAATAACTCTGAATCCTTTAAGGCACATTGACTTGACGGGAATACT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAGTATCCATTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //