Array 1 1606-1364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCZ01000012.1 Neisseria meningitidis strain M21980 M21980_CHA4301A14_cleaned_ctg_10474, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 1605 26 100.0 50 .......................... CGGCTTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 1529 26 100.0 42 .......................... CAGACCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 1461 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1389 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== ================================================== ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : TAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGGATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCGA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 504-2123 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCZ01000014.1 Neisseria meningitidis strain M21980 M21980_CHA4301A14_cleaned_ctg_10478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 504 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 570 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 636 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 702 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 768 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 834 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 900 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 966 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 1032 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 1098 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1164 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 1230 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1296 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1362 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1428 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 1494 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1560 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1626 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 1692 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 1758 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 1824 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 1890 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 1956 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 2022 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 2088 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //