Array 1 126523-126006 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSP01000014.1 Streptomyces fradiae strain olg1-1 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126522 29 100.0 32 ............................. GTGGCGCAGACCGTGCTCGGGCACGAGCGGGG 126461 29 100.0 32 ............................. GAACAACTCCTCCTCAAGTTCGTCCAACGCCT 126400 29 96.6 32 ...........................T. GCCTGGTCAGAGAGGTGGTGGGGTCGTTGAAG 126339 29 100.0 32 ............................. GCGTATCAGCGCGCATCCGGGCAGTGGGTCAA 126278 29 100.0 32 ............................. CCCCGCCCTGCCCGGAGGGGAATCCGGGAGGA 126217 29 100.0 32 ............................. CTCGGACCGGCGGACGGCCTGACGGGCCCGCT 126156 29 100.0 32 ............................. TGGACGCGGTACGAACTCAAGAACGTTGCTGA 126095 29 100.0 32 ............................. TGCTCGGTGCTGCGCACATCGCAGTTCCCGAA 126034 29 89.7 0 .............A...........A..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGCCACGGGCCTGGGCATCCGGGCCTGCCAGGCCGGTCACCGAGTCGCGTTCGCAACCGCCGCCGAGTGGGTCACCCGCCTGGCGAAGGCCCACGAGACCGGCCGCCTGGACGAGGAACTGGTCCGGCTCGGCCGGATCCCGCTCATCATCGTCGACGAGGTCGGCTACATCCCCTTCGAGCCCGAGGCCGCGAACCTGTTCTTTCAGTTCATCTCGGGCCGCTACGAGCGGGCCTCGGTGATCGTGACCAGCAATAAGCCCTTCGGCCGCTGGGGCGAGGTCTTCGGCGACGATACCGTCGCCGCCGCCATGATCGACCGCCTCGTCCACCACGCCGAAGTCATCTCCCTCAAGGGAGACAGCTACCGCATGCGCGGCCGCGACCTCGGACGGGTTCCCGCCGCCAACACCAGGGAATGACCAACATCAACTGACTACGGGTCCACTTTTCATCCGCTGCCTCCGGTCCACGATTGCGCCGTTACCGACACTCGGACAG # Right flank : CTGCGGAATGGCAAGCAGTCGTTCTGGGCCTTCCAGATGCTCCAGAAGTTCACAGCTGGACCGAACCCCGTCCGCAGTCGGTCCGTGGATGGTCCGTGGACGGTGATCAACCGGGGAACAGAGTGAGACAGGGTGAGACAGCGAGCCGCAGGACGCGGCTCGCAAATCGGCCCGGAACCCCGTTCCACCTGCGGTTTGTGTGAGCTGAGGAAACTGCTCGATTCGTGCGGTCGGGGGCCATTTCAGGACACTTCGGCTTTCAAGACCGTTCCCTTAGGCCGCTCGGGCAACCCTCCCTCGCCCCCGCCCACCTGCGGCGGAAGCGCCTACAGCCTACCTGGCGGGCCCAGCCGTAGGGCTCTTGGTCCGTCCCTCGGCCGTGACCTCGGAGACCGTGCTTCCGGCCGCTCGGCGCCGCGGGCAGGCGTCCCCATGCTAAGCGGCACGATCGCTTCTCTGTGGGGCAGTTGAGGAAGCGGCACGTCTTGCTCAGGTGGACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1367-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSP01000127.1 Streptomyces fradiae strain olg1-1 contig00127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1366 29 100.0 32 ............................. CTGCGTGGCGACCATGCCCGTACCGAGCCCGG 1305 29 100.0 32 ............................. CAGGCCAACTACGACGGCAACCGCGGGGACGA 1244 29 100.0 32 ............................. TTTAGGAATCGCCGTCCGCGAACGCGTCGAGC 1183 29 100.0 32 ............................. AGCAGACCGCCGAAGGCCTCGCCAACGTCTGG 1122 29 96.6 32 ............................A GAAGGGCAAACGGCTGCGCGCGGAGCCCATCG 1061 29 100.0 32 ............................. CGGGGCGGGTCAATATGTGTGCACAGATAGCG 1000 29 100.0 32 ............................. GCGGCGTACGTCGCGCTCGTGGCCTCGGCCGC 939 29 100.0 32 ............................. CAAGCGGTACACCACGGTTCATGCACAGTTTC 878 29 100.0 32 ............................. CCTTCGGCGGAGGCCTTGGAGCCGTCCGTGGC 817 29 100.0 32 ............................. AGCCGGGCCGAGGCCGCGCGGGCCAACCGGGC 756 29 100.0 32 ............................. GAGGCCATCAAATTCGGTGGCTATTCCTACAG 695 29 100.0 32 ............................. TCGAAGATTCCGCCGTACCGTACGGCGATCAT 634 29 100.0 32 ............................. ACGCGGACCAAGGCCCGCGCCCGGAAGAAGAA 573 29 100.0 32 ............................. CCCTCCGCGTCGTCCTCGACAACGCCGACGAC 512 29 100.0 32 ............................. GAAGTCTCGCCGCTGCTGCTGGACATGCTGGA GCGA [491] 447 29 100.0 32 ............................. CGAGGAAGCGAAGGGAGCGGCCGCCGTGGCGG 386 29 100.0 32 ............................. GGCCGCCCGCCGGGCTGCGAAACGCGGCGGAC 325 29 100.0 32 ............................. CACCTGTCGCGTCCAGTGACGGCCCGTCAGGC 264 29 100.0 32 ............................. CAGAAACGTGTCGTGCTGGAGGCTCTGGCCCG 203 29 100.0 31 ............................. ACCCGCATGGCCGCGGAGATTCCGGCCTGGC 143 29 100.0 32 ............................. TGGCTGCGGCCGCGCGCCTGGTGCCCGACGTG 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : CCCGCGCATCGTCGCCGACATCCAGCAACTGCTCGACCCGGACACCGAGTACGAGGTCCCGGACCCGGAGGAACAACTGGTCGACCTGTGGGACCCGGTAGCCGGCGCGATCCCCGGCGGGGTCAACCACGGAGTGGAGTCGTGACCGCGCCCACGAAGGGACACGACCCATGTCCTCAATGATCGTCATCTCCGCCACGGCGATCCCCGACCACCTCCGCGGTGCCCTGAGCCGCTGGCTGCTGGAGGTAACACCGGAGCTGTACGTGGGCACGGTCTCGGCCCGTGTCCGCGACGAACTCTGGACCTCGGTCGCCGCCTGCGCCGGAGACGGCATGGCCGTCCTCGCTCACCCCGACGACAACGAGCAGGGCTTCACCCTCCGCACGGCCGGCACCCGCCGCCGGGAACCGATGGACTTCGACGGCTTGACCCTGATCGCCTTCCGCAGAGAGAGTCAAGAAATGGCAAACCGCTTCTGAAAGCGCAGGTCGGGAAGT # Right flank : GGTACTGCCGGGCCTGCTCGGACATGGGCTCCGGTGCTCTCCGCGCGAGCGGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11104-11559 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSP01000127.1 Streptomyces fradiae strain olg1-1 contig00127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11104 29 100.0 32 ............................. TACTGGGCGCTGCAGGGGCGGGTGGAGCCGCT 11165 29 100.0 32 ............................. GTCGGCGAGGCCGTCGGGGAGATCGCCCCCTG 11226 29 100.0 32 ............................. CGAGAGGGGATGACGATCATCCGCGCCTTCGC 11287 29 100.0 32 ............................. CGGCACGGCGGGATCGGTTGACCGGAGGCGTC 11348 29 100.0 32 ............................. GCCGAGCCCCACCAGGACGATGCCACCGCCGA 11409 29 96.6 32 ............................C CGTCCACGAACTGCGCCGAGTTGAACACCCGG 11470 29 100.0 32 ............................. CAGATCGCACGAAAGCTGCGCAGCTACCTGAG 11531 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCTCTCGGCACCCGGCGCTCGCAGATAGACCGGCTCGTCACGCACGGCCGCGAACGCCGCCGGCACCTGGGCCTGGAACGGCGGCGTGATCTTGCCCAGGTCATGCAGCCCGGCCCAGAACGACAGGACTACCCGCGCTTCTCTCACGGGCAAGCCCAAAGCATCAGCCAGGCGCTGTCGCATACGCTCGCCGAGTAAGCCGTCCCAGAGCGCGGAGAACACAGCGGCAGTGTCGAGCAGGTGACACACCACCGGGTACGGCCGCGATAAGCCCTTCTCCTTCCCCCACATACGGGGGTCCAGGAGAGGTGTCCCGTCGGCCGGGGGCTCACTGTTCATCATGCGCCAGGGGTACCAGTCGGCACTGACAACGCCCAGCACGCCCATACACTGATCTGTCATGACCTCACCTCACAGCGCCGATTTCGCTCGGGCCGCGCTGCGACTGCACAAGGGCAAAGTAATTGCAAAGGCGCTCTAGAAGGCCAGGTCAGGAAGT # Right flank : GCCGAGCCCCACCAGGACGATGCCACCGCCGAGTCCTCTCCGCGCGAGCGGAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2528-1644 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSP01000169.1 Streptomyces fradiae strain olg1-1 contig00169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2527 29 100.0 32 ............................. GCGATGTGGTCCAACGTCCTCGGCTACTACGC 2466 29 100.0 32 ............................. CCTTCGCGGATCATGGTGTCCCTTTCGGTGTG 2405 29 96.6 32 C............................ CGGGTGCCGTCGCAGCGTGAGGCGGGTGCGGC 2344 29 100.0 32 ............................. CGGATACGCCTCCTGGCTCAACGGCACGATCC 2283 29 100.0 32 ............................. CACGACGCCGCCTGACCGCCAGAGAGGACACC 2222 29 100.0 32 ............................. GCTGGCCCGCCAAGACCAGCCGCGACACCGAC 2161 29 100.0 32 ............................. TTGTACATGGTGGTGAGCTTGTGGGTTCCGCT 2100 29 100.0 32 ............................. TCACGTACGGGGACCTCGGTACGTGACCCGGT 2039 29 100.0 32 ............................. TTGTTGTCCCAGGGTGTGTAGTCGTAGCCCTG 1978 29 100.0 32 ............................. CCGTGGAAATGGACCCGGATACGGACGAGGTC 1917 29 100.0 32 ............................. TTGGCCGCCCCGGGCGTATCGGGGCGGCCACC 1856 29 100.0 32 ............................. CCGGCGTTCTCTTACCGTGACTGGCGAGGAAA 1795 29 100.0 32 ............................. ATCACCCGCCACGGCGGGCCGACCATCGCCGG 1734 29 100.0 32 ............................. GCCGCCGCCAAGGCGCTCGACGACGCCGCCGC 1673 29 100.0 0 ............................. | A [1667] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCA # Right flank : GTCGAGCGGGGCACCTCGCACGGCTCGGATGTCGACAACGCCTCAAATTGTGCCGCCTCCAACGGATGAAAAGTGGCCCGTCTGAACGGTCTGGCTCGTTGAGTCAGGCAGGGAGGAAGGGTGATCAGCGTGGAGGACTGGGCGGAGATCCGCCGGTTGCATCGGTCTGAGGGCATGCCGATCAGGGCGATCGCTCGGAAGCTCGGGATCTCGCGGACGACCGTGCGGCGGGCGGTGGCCAGCGACCGGCCGCCGAAGTATGAGCGGGCCCCGAAAGGGTCGATCGTGGATGAGGTCGAGCCGAGGATCAGGGAACTGCTGGAGGTCTGGCCGGACATGCCGGCGACGGTGGTGGCGGAGCGGATCGGCTGGCAGCGGGGGATGACGGTGCTGCGGGACCGGCTGCGGGACCTGCGCCGGGATTACGTTCCGGCGGACCCTGCGTCCAGGACGGCCTATGAGCCGGGTGAGCTGGTGCAGTGTGATCTGTGGTTCCCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30862-30284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSP01000077.1 Streptomyces fradiae strain olg1-1 contig00077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30861 29 100.0 32 ............................. ACGGGTGCCCTGTCCCGCTCCTACATCGTGGA 30800 29 100.0 32 ............................. CTCACCGTCTCCGACGCGACGGCCGAGACCAT 30739 29 100.0 32 ............................. CTCCTCGCGGTGAGCGCGGCGGACTGTGTGGA 30678 29 96.6 33 ............................A GTGACGGGGGTCGAGTTCTTGCCGGACGCGGCG 30616 29 100.0 32 ............................. CATTGGGACACGATCGTTGCGAAGACGCGGGC 30555 29 96.6 32 .......................A..... GACGGTTACTCGATCGCGCTGCAGATGCTCGC 30494 28 96.6 32 ......-...................... AGCGAGACGTAGCTGCGGCCGGTCACTGCGGT 30434 29 100.0 32 ............................. TTCGCGGACCGTCTCCGCGGCCTCCACGTCTA 30373 29 96.6 32 ................T............ ATCGTCTCGCCTGATCACGTTCGCCGTGCCAT 30312 29 89.7 0 ..........T...........C..T... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.6 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : GCGAGCGGAGGTGACCCGAGCACGGAGCCCGGTGGGCAGGCTGGCGCGG # Right flank : GTGAACCGAGTGTCCAACGCTCGGGCATTGGACGGGTTCCGGTCGGCTGTGGTGTTCCTGTCGAAACAGGAACACCACAGCCACCGTGCCGTCAGTTGTCAGGATCTGCCTCCAAGCCAGCCAGCGCCACGTCGATGAGGTGGTTGGAGCTCTGCTGGGCGCCCCGTAGGACCTTGGCGTAGAAGCGGTAGAGGACGGCGAGGCTGTGCCCGGCGCGGCGGGCTACTTCGACCGGGTCCACTCCGGCCTTGAGCCACAGGGAGATGCCCGCGTGGCGGAGGGAGTAGGGGACGTCTGCGAGGGATGTTCTGGCCTCCTCGGGGCTCAATGCCTTCTCGCGGGCCTTCTCCCACAGTTCGCAGTATTCGGTGGAGCGGACCCGGCCGCCGCGGACCGCGCGGAAGAGGCGGCCGTCCGGGGCGGTGCCGTGGGTGGCCAGATGGGTGCGCAGCATGCCGACGAGAACGGGCGGGATCGGGACGGGGCGGGTCGCCTTGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //