Array 1 8466-6248 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQHM01000003.1 Listeria monocytogenes strain CDPHFDLB-FM17-00087 FM17-00087_Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8465 36 100.0 30 .................................... TAAATAATGATGGTACACACGACTTAGTCT 8399 36 100.0 30 .................................... GTAGAATGCAATGGGTATATAGTTATTTTC 8333 36 100.0 30 .................................... TCCGAAATGTATACAGAGGGGCTATTCTCC 8267 36 100.0 30 .................................... CGATTAAAGATGTGATGAATTTAGAGACCA 8201 36 100.0 30 .................................... GACATTACACAAGCTACGACATACGCACAC 8135 36 100.0 30 .................................... GACCGCTCCCCCTAGTAAACCAAATACATA 8069 36 100.0 30 .................................... TTAAGTTATGCAGATTTAAATTGGATTAAT 8003 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7937 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7871 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7805 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7739 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7673 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7607 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7541 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7475 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7409 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7343 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7277 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7211 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 7145 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 7079 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 7013 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6947 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6881 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6815 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 6749 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 6683 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 6617 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 6551 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 6484 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 6418 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 6352 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 6286 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [6251,6254,6259] ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49628-50956 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQHM01000001.1 Listeria monocytogenes strain CDPHFDLB-FM17-00087 FM17-00087_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49628 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49694 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49759 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49823 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49889 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49895] 49957 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50022 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50087 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50153 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50217 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50282 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50347 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50412 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50475 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50538 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50604 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50667 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50732 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50798 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50863 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50927 29 93.1 0 .......................A....C | C [50950] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //