Array 1 68963-66919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQDG01000015.1 Leptonema illini strain 56270 Contig015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 68962 37 100.0 34 ..................................... TCAGGCTACCTCCGAGGAGTCGGTAAAGCGGAAA 68891 37 100.0 33 ..................................... TCTATAACGACGCCACGTAGTCGGCGAGCTGCT 68821 37 100.0 34 ..................................... AAGCTCCGCTTTTGCCATCGCACTTGCAACTGCG 68750 37 100.0 36 ..................................... ATATCAAGTAGACGCTATTTGCCCGATCTGTCAACC 68677 37 100.0 34 ..................................... TTCAGACGGCGTGCATCTCACTGCAACCGGTTTC 68606 37 100.0 34 ..................................... TTCTCGGACTCCGATGATCTTAAGCCCATATTCG 68535 37 100.0 34 ..................................... TCTCCGGCGAGCGAGGATGCGTCTCGCTACAGGG 68464 37 100.0 35 ..................................... CTAACGATCAGGAAGAGTATGCGGAAACCGTGCGC 68392 37 100.0 37 ..................................... ATACTGTCTATTGTATGGCCTTGGTTTACTACTACGG 68318 37 100.0 35 ..................................... CAAACTTCCTGTTCGCTAAGACCGGCGAATTCAGG 68246 37 100.0 33 ..................................... ATAAACCTCGATGTAAGTCCCGATACCACCGAC 68176 37 100.0 34 ..................................... ATCCCTTCTCGAACCATTACGACCTACGTATTGT 68105 37 100.0 42 ..................................... CGGACGAATCTGTATACACGGAAGAAACTGTCCTCGACCTGA 68026 37 100.0 35 ..................................... CACCTCGTTAAGATCTGACAGACTCGATCGGCGTC 67954 37 100.0 36 ..................................... ATTTTTGTGCTCATCTTTTCCCCCGTGAATCAGAGC 67881 37 100.0 35 ..................................... TTGCCTATAACCTTAGCGCGAATCTGCATCCAGTA 67809 37 100.0 33 ..................................... GGGGCTAACTCTGTTCTCACGTCGATTGACTAT 67739 37 100.0 33 ..................................... CAGATAAAAAATACGTATAACCCGGCGCAGCAA 67669 37 100.0 36 ..................................... AGTGTGTCCCTCGGCTTGATCCGTTCGCTGTACAGA 67596 37 100.0 35 ..................................... TGGTGTGCGTTATACAGAGTTTTTGAGAGCTGTAT 67524 37 100.0 33 ..................................... GACGATTAAACTCGTTTAGCGCCATCGACGGTG 67454 37 100.0 34 ..................................... GCTGCTGCTATGGGCCTTGGTCAGGCCTTTAACT 67383 37 100.0 33 ..................................... TACTCCAGGAGCTGGTACGAAACCGGGATTTTG 67313 37 100.0 35 ..................................... GCCAAGATAAGGGTGCTTGCAGTTCATTTTGTTTC 67241 37 100.0 35 ..................................... ATAGAATTCGGCCACATGTTGCTTAAATGTATTTT 67169 37 100.0 34 ..................................... AAGGACGCAAGAGCAATCGGCGTCGCGTACGCAG 67098 37 100.0 35 ..................................... AGCGCCCCGTCCATATCGAGATGAGCCTGTCTCCC 67026 37 100.0 34 ..................................... ACCGTCATAGGGGTGGGCGAATTGGCTGAGGTCG 66955 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 100.0 35 CTTTCATCCTTCCTTCGGGAAGGATGTGGATTGAAAC # Left flank : GACGTTGAGACCGTGACAAAAGAAGGTCGACGACGATTGCGTCGAGTAGCGAAGGTCTGTGAAAGTCACGGCCAGAGAGCTCAGAAATCCGTTTTTGAGTGCCGCATGGAGCTATCTCTCTATCTACAATTTGAAGAGCGCCTGCGTTCCATCATTGACACCGAAAGCGATAGTCTGAGGATCTACCAGATCGATGAGGACTCTGTTCGAAAGATCAAGCAGTTCGGGCAAACCGGCCTGCGAGACTTCGAAGAACCTCAGATCGTATAACGCAGGCCAATTTGCTTCTGCGTTAGTGAACGAAATGCGAACATGGGTCTCCCGGAAAAACCCGGGGGGTTCGCAGCGAAGCAAAACGTGCTTTTTCTCGAGGAAAACCGACAAAATGCAAATGGAAACTCCCCTAAAAACGCATATCCTGTCAGGGTTCGCAATGAGGGGTATAAATATGCCCTCAGAGCTATCCAGAAGCCCCGTAGAGACACGCCAGGCCGCCCGCC # Right flank : GGATTACAGGGACGTTACGATGAATACCGTTCGACGGTTTCCTTTTCGCGGCTTTCGCGCTTTTCGCGGTCAAATTCTTACTCCAACAGAACCGTGAAAGACGCGAGCCGCCCGCGCACTCCTGCCCGATTAACTGATATTATAGAAACTTCTCATCATCCTTCACCCATTCACGACGGCTTTGCTCGGCGCCCTCGGTGTCCTCTGCGGTTTACAACTCCGCACAGGTCTTCCCTCTCCGGATTGACAGCACAGTCCGGCTCGCCAAACTCACACCGTGTCGCATTCAACACACATCCTGCTTGTGGAGCCCGACGACACGTTACGCTTCACGATGGAAAAGCAGATCGGCTATTTCGGATTTTCCGTTCAGTCGATCACAAGCGTGGATGAGCTGCGATCGGTCGAAGAGGCGCCGGCCGTGCTTGTGATCAGCCTCGGCGAAGAAGAAGGCAATGCGGCGATGGCCGTTTCAGAATTCAAGTTCAGGCTTGGCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCCTTCCTTCGGGAAGGATGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 25642-21764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQDG01000001.1 Leptonema illini strain 56270 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25641 29 100.0 32 ............................. TACATATTCGTAGGAGCTAACACGCTGTCATG 25580 29 100.0 33 ............................. ACTACATAGCGCACCGTAAGCAGGAGGTCGCGT 25518 29 100.0 32 ............................. TTTCCGGCTCTTTATGCTGCACTCGATGAATA 25457 29 100.0 33 ............................. CCTTTTGGTTATACAGAGATTTCGGTATACGTA 25395 29 96.6 33 ............................A GACAATACATTCGCCATCTCAACTGTTGATGGC 25333 29 96.6 32 ............................C TCTCACCGGTTGACCCTTGCCGAAATCACTGA 25272 29 100.0 32 ............................. GCCGCTGTTGTTCTGCGCGTAGCGCAGTGGGC 25211 29 100.0 32 ............................. CAAACCTGAGCGTCTCGATCTCCTCATCTGTC 25150 29 100.0 32 ............................. AGGTCGAGAAAGTTGCTAAAAAGGCAACCAAA 25089 29 100.0 32 ............................. CTCACGGACGGAGAAAAGAAAACGATCGTTTT 25028 29 100.0 32 ............................. CGCGCCGCACGCGACTGGTCCGACTCGAAGTC 24967 29 100.0 32 ............................. TATTCCGGCGGAAGCTATCTTAGCTTTGGCAT 24906 29 100.0 32 ............................. CTTGTCTCCTCTGAGATTGACCGAATTCTCGG 24845 29 100.0 32 ............................. TATGCTATTCTGTGGCATGGATTTACGAGCAC 24784 29 100.0 33 ............................. GCCTTCCGTGAACTGGTTCAGCGCCCCGTCCAT 24722 29 100.0 32 ............................. TATAACATCATTATCGAGGACTTCATTCTTCC 24661 29 100.0 32 ............................. CAGGAGGTCGCGTAATGGCTATCACAGAACGA 24600 29 100.0 32 ............................. CCCTCCAGAGGTTGGAAGACCTTTCAGATCCA 24539 29 100.0 32 ............................. CGACAGCACACCGCCGGAAATCCCGCCGAGCT 24478 29 100.0 32 ............................. TCATGTATGTATTTACGACTCTATGGGGATAC 24417 29 100.0 32 ............................. CCTAATCCGCCGGCGATAAATGCATATACGAT 24356 29 100.0 32 ............................. AGACTCGGAAGAGTAAGACTGAGGCTGACTAT 24295 29 100.0 32 ............................. TCGTCAGGCATCATAATGGGGGTAGGGGCAAC 24234 29 100.0 32 ............................. TCCTGCGATGAGCCCAGACTTCGGGTCATCGA 24173 29 100.0 32 ............................. CACTCCGCAATTTATCCGTAACCCTTGAAACG 24112 29 100.0 32 ............................. CTGCCGGGCTTGAAAAGCGCATCCGGAAAGCT 24051 29 100.0 32 ............................. AGTATCAGAAGCAGGGGCAAACCGCCGCTTTG 23990 29 100.0 32 ............................. CCTTTGATTTAAAGTGGAAACAAATAGAAGAT 23929 29 100.0 32 ............................. GTTAAACGAGCTCATCGATAGAGCCCGCGAGT 23868 29 100.0 32 ............................. CCGTGGCCGAATGGAGCATCGCCAGAAGACGC 23807 29 100.0 32 ............................. AGTCTTCGAATACTCGCGGACGCCCCGAAAGT 23746 29 100.0 32 ............................. TCGAGTTTAAATTGGTTGACCACCTCGGCCGA 23685 29 100.0 32 ............................. TACGATCCTCAGCCCCTCATAAAGGCGTACAT 23624 29 96.6 32 ............................T GCCCGAGCTCATCAAACCCCACAAACTGGAAC 23563 29 100.0 32 ............................. TCACCGGTAGGAAGATAAAACAGATTCAGATT 23502 29 100.0 32 ............................. GGCACAACTAAACCCCAGGAGGCTTAATTATG 23441 29 100.0 32 ............................. GGCGGCCTCGTCCTCGAATAAAAAAAGAAATT 23380 29 96.6 33 ............................A GACAAGTCTATTAAGTTAACCAAAAGCGGAGAG 23318 29 100.0 32 ............................. CGAGCGACGTCGTTCGGGATGCTCGTGCGGTC 23257 29 100.0 32 ............................. CGCCCTCGATCAAAACTATTCAAGAGAAGTTC 23196 29 100.0 32 ............................. CGCTCGACTGGTGGAAAAAATGGAAACCCCGA 23135 29 100.0 32 ............................. CTTGAAACGCACGTAGTCGCCGATGAGTTCGT 23074 29 100.0 32 ............................. ACACCGCAGAAGCAGCGGGCGCCGGCGCAATC 23013 29 100.0 32 ............................. TTTTTCGCCAGCAACGTCCGGGTAAAACTGAG 22952 29 100.0 32 ............................. CGATCGGCGGATAACGGTTGCGGAGTCCGTTA 22891 29 100.0 32 ............................. TTCATTGGACCATTCAGGATGAAGAATAGCAA 22830 29 100.0 32 ............................. TTTTTCGGGACGACAAGGGAAGGTTCTATACG 22769 29 100.0 32 ............................. TATTTATAAGGGAGAATAAAGAACATGAAAAC 22708 29 100.0 32 ............................. CCATAGCGCATCAAGAACGCAGCGGCGAACTT 22647 29 100.0 33 ............................. TACGGGAACGAAACTGCCCGTAGGGATCTGGAA 22585 29 100.0 32 ............................. TGATCATTCCGGTTGGCCATGTGGCCGAAACG 22524 29 100.0 32 ............................. GACATCGACGTTGTGATAGTCAGAGGAGTGCA 22463 29 100.0 30 ............................. GACGTCAGTAAGTTGCGAAAATCCATCGGG 22402 29 96.6 32 ..........T.................. TGAGCGACCGCGATCTCATATCGGCCGTCGTC 22341 29 100.0 32 ............................. TCAGAATTTTCGGGCGTTGAAACGGTCGTCGA 22280 29 86.2 32 ...........ATGC.............. TCTTCGTCGCCGCTCACCTCAACCTGAACGGT 22219 27 93.1 32 ...........--................ TCGACTCCGCTCTTCGGCGGTGTGACGATCTT GT [22202] 22158 29 86.2 32 ...........ATGC.............. CGCTCAATCGGGAAAGGCGGGTATGCGTTCAG 22097 29 89.7 32 ...........A.GC.............. CGCAGACGGGACATCGACAACGTCCTCAAGGC 22036 29 86.2 32 ...........ATGC.............. CGAGTCGTGCTTCTGTTCGACGAAAGCCAGAA 21975 29 82.8 32 ...........ATGC......G....... GCGACGTTGACCGAAACGGACAGATTCGAGAC 21914 29 100.0 32 ............................. TATCTCGTCACCGGCAACCTGAACACCAATGT 21853 29 86.2 32 ...........ATG.......C....... AAAGAAGCGCAGATCGCTGTCCTTGCCGGCAT 21792 29 69.0 0 ........A.TATGC.....C.A.G.... | ========== ====== ====== ====== ============================= ================================= ================== 64 29 97.8 32 CTATTCCCCGCGCATGCGGGGATGAACCG # Left flank : CTTGCTGACCTCTATAAAACGGAGCTCACTATACCGATCGCATTCCGTATAGCACAGGGGCCGGCATCGGTAGAATCACGTGTAAGAATGGAATGCCGTGATGTTTTCAAAGAGCGAAAGCTGCTCAAGCGGATCATTCCTGACATCATGGAGGTGTTGTATGGTAATCGTCGTGCTGGAGAGAGCGACGCCGGCTCAGAGGGGCGTGATGTCGCGGTTAACTATTGAGCTGAAAGCTGGCGTTTTCGTCGGCAACTTCGGCCGACGTGTGCGCGAGAAGCTATGGGCGCGCATAACGGAAGAGTGGAAAGTGGACGCTTTGATGATCTATAAAACGAACACAGAGCAAGGCTACGCAGCTCTTTCGAACGGTGACACGAGCCGGGAAATCGTCGATTTTGAGGGGATGGTGCTCACCCAGTATCCCGTTCCAGAAAGCAAGCAAAAACCTGCTTGACTTTAAGCAGTGATCTTTAAAAACACCTATACGGACTTTTAGT # Right flank : TGCAGGCCCTTCATTTGCAACGAAGGGAAAATCACCAGCGAAACGATACACGACACTTACTGCCCGGCGAACAGAGAGAAGAGGCTACCTAACAGCAGCCTCTTCCCCTCACAGCTCTTCTCTGTGCCCTCCGCGTCCTCAGCGGTTAAATGATTTCTAAATGTTTAGCGAAGCCGCACATGAGCGTGTTTTTGCCTGTGTAGCAAGGGGAAGCGGGCTTGCTGCCCCCGATTCCTGCTTGCACGCAGAATCGGCTTTTCGAGACTGACCATGCTTGCTCCCATAGCTCAGTCGGTAGAGCACCTCATTCGTAATGAGGGGGTCGGCAGTTCGAGTCTGCCTGGGAGCTGGTATTCACTTCTTAATTCACAATCACCCGTTTTCTACAGTCTGGCGTAGGTTTTACGGCCGCGCTTGATAGCTATCTCGAAGCCCATGGAATGAATAAGCCGCGCGAAGCTTGAGAAAGTGGGGTTGTCGCGCTTTCCGCTGCGCAGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //