Array 1 286701-287702 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNT01000001.1 Salmonella enterica subsp. enterica serovar Norwich strain 180 NODE_1_length_552356_cov_22.349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 286701 29 100.0 32 ............................. GAACGGACGGTGAAAAATACCTGGTAAGTCGC 286762 29 100.0 32 ............................. CATAGCGTCCTACACCATATTTATCCGGGTAT 286823 29 100.0 32 ............................. GATTGCTCATGCTGTTTTTCCCTGGTTTATTT 286884 29 100.0 32 ............................. GATCCCAAACTGGTCAAGCTGGCGATTATCAA 286945 29 100.0 30 ............................. CTGGATTGATGGGGGGGTTATTTATTGCGG 287004 29 100.0 32 ............................. AGTGGTACGTTGTTATTCATATTGCCTTTCAT 287065 29 100.0 32 ............................. CACCACCTGGTGCAAATGATTCACCACCTGAT 287126 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 287187 29 100.0 32 ............................. ATTATAATTTCAACAAAACTAAAACAATATCA 287248 29 100.0 32 ............................. TCTTTTTGAGCCGGGGTAACTTTCTCCCAGTC 287309 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 287370 29 100.0 32 ............................. ACGGTGTGCCGCCTTTGACCTTCGGGGGTTTT 287431 29 100.0 32 ............................. ATTTCGTGAATACGCGGATCGTTTTCACAGCT 287492 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 287553 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 287614 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 287675 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 303972-305526 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNT01000001.1 Salmonella enterica subsp. enterica serovar Norwich strain 180 NODE_1_length_552356_cov_22.349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303972 29 100.0 32 ............................. CTGCTGTAGCGGTCCTGGCGGGGCTTATCCCC 304033 29 100.0 32 ............................. CTAAATATTCACCCTCATCGTCGATAACCCCA 304094 29 100.0 32 ............................. TTGATGGTGCCGTTGTCGCATTCCGTGATTTT 304155 29 100.0 32 ............................. TCTATAGCCTCTTTCTGCTTCATCCATGTACA 304216 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 304277 29 100.0 32 ............................. CGGCACCCAGTGCGGCCAGAATCCCGATCAAC 304338 29 100.0 32 ............................. CTGGTGGAACGATGGCGGCGAATGGAGAGAAA 304399 29 100.0 32 ............................. GTATTCAGCTCTTGCCGCAATATGCCGCTCAA 304460 29 100.0 32 ............................. ACAAACACACAGTTTGTTGATAACAAAACAGG 304521 29 100.0 32 ............................. GGTATCTATATCTCGCGTGATGATCTGCTCGC 304582 29 96.6 32 ................T............ TTGCCGCGATACGCCATAAACGCGACTCCGTC 304643 29 100.0 32 ............................. AAATCACAAAGCGCCCAGGGGGAGCAAATAAC 304704 29 100.0 32 ............................. GCGGTGTAACAGTTTGCGAGTTCGCCGCCCAG 304765 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 304826 29 100.0 32 ............................. GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 304887 29 96.6 32 .............C............... TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 304948 29 96.6 32 .............C............... ATATTCAAACGGCGCGGGGGGAGACATCCGGA 305009 29 96.6 32 .............C............... GTTACAGTATCATGTAAAACTGTATAAAAACA 305070 29 96.6 32 .............C............... ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA 305131 29 96.6 32 .............C............... TTGAAATCTATCGCCGGTCGTCGCCACGTTAC 305192 29 96.6 32 .............C............... ACAACGATAAATTTGTGCAGGGGCTATATAAC 305253 29 96.6 32 .............C............... ACAGGGTATATGAGCTTATACGTCATGAACCA 305314 29 96.6 32 .............C............... TTTGCATAGCGACTGTAAATTACTGAGTGAGT 305375 29 96.6 32 .............C............... AATTATCGGTATACGTATTTGCATCAATCAAT 305436 29 96.6 32 .............C............... CCTCAGCGCCAGCGGGAGCCGTGCGCTGGGTT 305497 29 93.1 0 ..C..........C............... | A [305524] ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //