Array 1 226994-228360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWW010000002.1 Streptomyces sp. KD18 Contig_2_Streptomyces, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226994 29 100.0 32 ............................. GTCGCGATGATCCTGGGCCGCTACCTCGGGCG 227055 29 100.0 33 ............................. CCGCTGCCTTTGGGCCTCCGACAGGCCGGCCAT 227117 29 100.0 32 ............................. AGAGGAGGCCGCACCCTTGAAGGGTGCGGCCT 227178 29 100.0 32 ............................. AGCCCCGTCGTGGCGCAGTACAGCGCGCTGCA 227239 29 100.0 32 ............................. TTTTCGACCCGGTCACCAACGCCCGCGCCGCC 227300 29 100.0 32 ............................. GGCGGCGCGACGGGGAGGTGCTGCACCCACGC 227361 29 100.0 32 ............................. CTACGCCCGAGCCCGCGGCAACCACCGCAGCG 227422 29 100.0 32 ............................. ACGATCTGTACGTCGCCACCCTTGGCACGGAT 227483 29 100.0 32 ............................. GGGCCGACGGTCGTGGTCTGGACGCTGAAGGT 227544 29 100.0 32 ............................. GCGGCCAACACGACCGGTGTGGAGGTCGTGGC 227605 29 100.0 32 ............................. GTGACGGTTCACTTAACCTCGTAGGCGGGGCC 227666 29 100.0 32 ............................. GGGCTGCTGCCGCCCGAGGCCACGCAGGGGCA 227727 29 100.0 32 ............................. GGGCCCTTTCTTCCGGGGCGTGGCCCAGGGTG 227788 29 93.1 32 ..............G.......C...... CGCCGCCGCGCCGCCCGTAAGGAGATCGCCAA 227849 29 100.0 32 ............................. GAGACGGTGCGACGGCGATTCGGCAGGCTCAT 227910 29 100.0 32 ............................. CACGCCAAGGACCACCACGGCTACCTGCCGCT 227971 29 100.0 30 ............................. GCGGCCGCTGCGAACAGCCGCGACCCTGCG 228030 29 93.1 32 ...............C........C.... CAGCGCCGCGCGATCCCCCGCGCCGGCACCCG 228091 29 96.6 32 ............T................ CTGCCCATCCTGCACCGCCGAGACCCCTATGC 228152 29 100.0 32 ............................. TCGTCCCGGCCGTACCTCACGACCTCGACGTC 228213 27 86.2 32 A....--.......T.............. CGGGCCGGATGGCTGCCGCTGTGCACCCCCAT 228272 29 86.2 32 ...A....T.TG................. GACGAGGAGTGGGCCCGCACCCTCGGCGTCGA 228333 28 79.3 0 ...........G..G.....CGC.-.... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.2 32 CTGCTCCCCGCACACGCGGGGATGACCCC # Left flank : CCGAACTCGCCCGCATGTCGGGGGAGCGGCAGACCGCGGAGCTGCTGCGGCTGTGGACGCTGAAGGAGGCCTATACCAAGGCCCTCGGGCAGGGCCTCCAGCTCGGCTTCACCGAGTTCGGCTTCGGCCTGCGCAGCGGCGGCCTGATCGCCCCGGACGGCACGCCGGCGGGCGGCGGGGAATGGGCGTTCGCGACCCACCCGGTCCTGGCCGACCGCTACCTGCTGAGCACGGCATGCCACGACACGGGCCTGGACCCGGCCCGCGACACGGCGGTGCACACGATGCTGGACCCGGCGTTCATGGCGGCGGTGGAGGACGCCCTGACGACGGGGTGACGGTCGCCCCTGCCGTTTGCCGGCCACCGCGGCGCACGCGCGCCGACCCTGCTGTTCCTCGCAAACGAAAAACCTGATTTGAGTCGTAAACACGAAATGCCGGATACTGCGAAAGTACTCGGAACCGCGTCCCTTGTCGCATAACATCGCAGCTCACGTAGT # Right flank : CTGGAAGCCTGGCCAGAGGTCGTCTCCGCCTGCAAGCGGGGGATCGGGCTTCGTTCGGCGCCTCGGCGTCACGCCCGGTGGCGGAAGTCGGCCGCGTGTTCCTCGGCCCACTGGGTGAAGGTGCGGGCCGGGTGGTGCGTCACCTGCTCGACCGTGTTGACCACCGTCGTGGAGTCCTCGGTCGGCTTCGCGTACCAGCCCACCACGTACTCCGCGTCCGCCCGCGATACGCCCGTCGCCATCAGGCGCTCGATCGCCTGTTCGTGTGTGATGCGGACCAGGTTGATGTCGCGCCCAATCGACCGCGACAGGATCGTGATCCGCTCGCTTGGGGTGAGCGCCTCGGGGCCCGTCAGGTTGTAGGCCTTGCCCGTGTGGCCGTCCTCCAGCAGGGCGGTGGCCGCCACCGCCGCGATGTCGGCTTCGTGCACCAGGGCGCTCGGGAAATCGTACGGCTCGCGCACCACGCCCTCCTGCCGCACCGAGTCCGCCCACGTCAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238972-240761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWW010000002.1 Streptomyces sp. KD18 Contig_2_Streptomyces, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 238972 29 100.0 33 ............................. GGCGGCCTGCGCGGCCGCGGACCGGGCGCGGCC 239034 29 100.0 32 ............................. ACCCTCCCCAGGAACCCCTTAGGAGGCCTCAC 239095 29 100.0 32 ............................. GAGACGCTTCGCCGCGTTTTCCGGGAGGCAAT 239156 29 100.0 32 ............................. AATTTCCATTGAATCCCCATGTCGACTGTGAC 239217 29 100.0 32 ............................. CGCATGTGAGCAGGTCAAGGTCACACCTTCGG 239278 29 100.0 32 ............................. GGGGGCGCGGCCGCGGTCGGGCACTCGTTGCT 239339 29 100.0 32 ............................. CCGGCCGCCGACATCGAGCTCGAGGCACCGCC 239400 29 100.0 33 ............................. CGATGTTGCCCGCGTTCCCCGCAGAGATGCCGG 239462 29 100.0 32 ............................. CCCATGCTCGCGATGAAGTCCTCCGCGATCCG 239523 29 100.0 32 ............................. CAGCGGCCCGGTCCACCGACCCCGCCGCCGCC 239584 29 100.0 32 ............................. TTGCCGCCGAACATGGTGACGCCGGCCGCGGC 239645 29 100.0 32 ............................. CCGCCATGCCGTGCACCCCCGAAGCCGTCACT 239706 29 100.0 32 ............................. AGGCTGAAGGCCGGGTTCACGCCCTGCACGTA 239767 29 100.0 32 ............................. CCGCCTGCGGTTCCTCCTCGGCCGCGAGAGGG 239828 29 100.0 32 ............................. CCGGCCTCGTCGGCATCCCGACCAGCGGCCCT 239889 29 100.0 32 ............................. CCGAGACCTGGTCGGCACAAAGGGAATCGTCG 239950 29 100.0 32 ............................. CGGAGCCGCATCAAGGAGATTGCGGGGATCAG 240011 29 100.0 32 ............................. GTCTCCGGCGTCGAGACGGACACAAGCGGGTG 240072 29 100.0 32 ............................. GGAGCAAGGGACTGCGGGTCCTGCGTGTCCCG 240133 29 96.6 32 ........................A.... ACCACCACCAGCCCGTCACCGGCTGCCCCTGG 240194 29 96.6 32 ........................C.... GGTACGCAAGGCCGGCGAAATGCTTTCGTGGG 240255 29 93.1 32 ......T.................A.... GCCAGTTCCCGGGTTCCGGGAAGTGGTCTGAC 240316 29 96.6 32 ........................A.... TCGGAGGCTTGGCGCAGGCACCAGATCAGCCG 240377 29 96.6 32 ........................A.... GCCCACAGCCGGTCCAGCCAATCGGCCGCCGC 240438 29 96.6 32 ........................A.... CGCGTTCTCGGCCTCGGTCTGCGCCCCCGCAG 240499 29 93.1 33 .............A..........A.... GCGCCCCACACCACCGGTGTGGAGGTCGTGGCG 240561 28 82.8 32 A.......A...T....-......A.... GGCGACGGCCCCTCGTCGCTCGTGCACCCGGC 240621 29 93.1 31 A.......................C.... CGGAGTCCGGAGTGGTCGTCTGCGCGGTGGA A [240631] 240682 29 89.7 22 ......................C.A...A AGCCCACCGACGCGGAGTTCGG Deletion [240733] 240733 29 86.2 0 ............T.T.........A.G.. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.4 32 CTGCTCCCCGCACGCGCGGGGATGTCCCC # Left flank : AGGTCATGCTCCAGTCCGACCGCGACCTCATGGTCGCCTCCGGCCGGAACCACGCCGACGAGGTGACCTGGTGACGGTGATCGTGCTGACACAATGCCCGGTCGGCCTCCGCGGCTTCTTGACGCGGTGGCTGTTGGAGATCTCCCCTGGCGTCTTCATCGGAGGGCCGTCCGCCCGGATCCGGGCGGCGCTGTGGGCGGAGGTGAAGCAGTACGCGGGCATCGGCCGGGCCCTGCTCGCCTACAACACGGACAACGAGCAGGGGTTCGCCTTCGAGACGCACGACCACAAGTGGCACCCGGTTGATGTGGAGGGAGTGACCCTGATCCACCGCCCGAAGGACCGCACCACACGGCAGCCCCAGCCGCAGCCAGGCTGGAGCAAGGCCTCGAAGCGCCGCCGCTTCGGTGGTCGGTAGGTCCGGCATGTCGGGTATGCCGAAACCTCTGCAAGTAAGCGAAAGGACCCCAGACCCTCCGAAAACCCGCAGCTCACGTAGC # Right flank : CGCCCCTGTGGTGGGCGCCATGCCGTTTTGGAGCGGTGGCTCGTAGCCGGGATATGCGGCCGCGACCTCAGCGTGGCCGAGGCTTCCTAGTTATCGTCGGTCTCAGCGTCGCTATGCGGTGCGGGCGAAGCGGGTGAGGGTGGTGCCGCTGGGGAAGGCGGTGCGTTCGGTGACGGTGAAGGCCGTGGGGTCGAAGGTGCCGTCGAAGGCCGGGATGCCGGCGCCGGCGACCACCGGGTAGCTCTTGACCACCAGTTCGTCGATTTCCGGCAGGAGGGTGCCTGCCAGTTTGCCGCCGCCGCAGAGCCAGATGTCCAGGCCGTTGCCGGCTTCCTTCTTGAGGTCGCGGACGAGGGGGAGGGGGTCTCCCGGGACGACCGTGACCGCCGGGTCCGGGTTCGGGGTGAGGGTGGTCGAGATGACGTACTGGCGCAGGTGTGCGTACGGGCTGGTGATGCCCGCGTCGTAGGCCGGGCGGTAGGTGCCGAGGCCCATGAGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCACGCGCGGGGATGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //