Array 1 2913567-2911585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIQ01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01591 2015LSAL01591_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2913566 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2913505 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2913444 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2913383 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2913322 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2913261 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2913200 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2913139 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2913078 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2913017 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2912956 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2912895 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2912834 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2912773 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2912712 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2912651 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2912590 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2912529 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2912468 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2912407 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2912346 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2912285 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2912224 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2912163 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2912102 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2912041 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2911980 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2911919 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2911858 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2911797 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2911736 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2911675 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2911614 29 96.6 0 A............................ | A [2911587] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2931503-2929825 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIQ01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01591 2015LSAL01591_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2931502 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2931441 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2931380 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2931319 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2931258 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2931197 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2931136 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2931075 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2931014 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2930953 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2930892 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2930831 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2930770 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2930708 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2930647 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2930586 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2930525 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2930464 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2930402 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2930341 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2930280 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2930218 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2930157 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2930096 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2930035 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2929974 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2929913 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2929852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //