Array 1 108719-106144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVG01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N31395 N31395_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108718 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 108657 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 108596 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 108535 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 108474 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 108413 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 108352 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 108291 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 108230 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 108169 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 108108 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 108047 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 107986 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 107925 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 107864 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 107803 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 107741 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 107680 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 107619 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 107558 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 107497 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 107436 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 107375 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 107314 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107253 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107192 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107131 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107070 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107009 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106948 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106887 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106825 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106722 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106661 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106600 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106539 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106478 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106417 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106356 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106295 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106234 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106173 29 96.6 0 A............................ | A [106146] ========== ====== ====== ====== ============================= ========================================================================== ================== 42 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //