Array 1 132-1179 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWWY01000095.1 Pseudomonas aeruginosa strain R4261 GCID_CRPK_0023_NODE_88.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 192 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 252 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 312 28 100.0 32 ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 372 28 100.0 32 ............................ GACCTCGTCGATCTTCTTGCCCAGGGCGAAAT 432 28 100.0 32 ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 492 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 552 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 612 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 672 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 732 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 792 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 852 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 912 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 972 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1032 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1092 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1152 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCGCTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAAAATCCTTGCCGTGAGAGAGGTGCCTGATGAGCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38071-38997 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWWY01000011.1 Pseudomonas aeruginosa strain R4261 GCID_CRPK_0023_NODE_43.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38071 28 100.0 32 ............................ TTGATGCCGGTGCGTTTCAAAGCGCGTGACTT 38131 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 38191 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 38251 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 38311 28 100.0 32 ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 38371 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 38431 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 38491 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 38551 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 38611 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 38671 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 38731 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 38792 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 38852 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38911 27 92.9 32 .....................-..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38970 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48393-47525 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWWY01000011.1 Pseudomonas aeruginosa strain R4261 GCID_CRPK_0023_NODE_43.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48392 28 100.0 32 ............................ TTGCCGATCAAGTTCGGATCCGAGCTGGCCGC 48332 28 100.0 32 ............................ AGGAAGGCATGAACCAGCTCTGAGTCCTTCAT 48272 28 100.0 32 ............................ CTGGCGAAGGGCAGGGATGACAAGGGACAGCG 48212 28 100.0 32 ............................ TAAGCCAATCAGCGACATTGTAGGGGGGAATC 48152 28 100.0 32 ............................ TGACAGCCCGGCGTTCACCGAGCTGGCCAGCT 48092 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 48032 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 47972 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 47912 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 47852 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 47792 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 47732 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCAGGC 47672 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 47612 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 47552 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //