Array 1 148228-149395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEN010000001.1 Pectobacterium brasiliense strain NAK:468 AANNGEPD_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148228 28 100.0 32 ............................ AGCGTCGAAAAACGCCTTATTCGCGGCGGCTA 148288 28 100.0 32 ............................ CGCATCATTGGGGTGGTCTTTATTGGATTTCT 148348 28 100.0 32 ............................ GCGCCGGATGGGACGCCATACGAATTCATTCA 148408 28 100.0 32 ............................ AAGAACGCCAATTGCCGCCCATTGGGTCGGGG 148468 28 100.0 32 ............................ GCTACGAAGGGTTATCAAATAACGATTACCAT 148528 28 100.0 32 ............................ AACGCGGATAACTTTCCATGCCGTTATCTGAA 148588 28 100.0 32 ............................ ACACACCTACCGATCCTGCTACGCCAGAAAAC 148648 28 100.0 32 ............................ CGCGCAAGCAGTGGCTTTATCCTGTTCGTTAT 148708 28 100.0 32 ............................ ACTGGATAGCATTCGCCGTGAACGCGCTGATC 148768 28 100.0 32 ............................ GGCGGCAATTTTGCGTTTGCTCATGCTCACTC 148828 28 100.0 32 ............................ TGATTCTGGCGGATTCTATAAAACCGCATCAC 148888 28 100.0 32 ............................ CACAGGGTGCGCCACGGCGTTGACGCATCGAT 148948 28 100.0 32 ............................ ATTATTTATTCTCCATGTTAGCGTTAAGGTCA 149008 28 100.0 32 ............................ ATTACCGTTTGACGCACTAACAAACAAACGAT 149068 28 100.0 32 ............................ TAGTGCGTTTTCTGTTGCTCTAACTGTGACCC 149128 28 100.0 32 ............................ TTCGAGAGGAAAGAGAGCGTCTCAGCCTTAGT 149188 28 100.0 32 ............................ AACAATTCGCACCCAGCAGACGGCCAGCGGTA 149248 28 100.0 32 ............................ TGTTACATCAATCGCTATATCTGACAGCACGG 149308 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCGTCATCGTTGCA 149368 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGTACCTCCTCCTTAATAAATACAGAAATTAAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTATATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGAAAAAATGATTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAAC # Right flank : AATAAAACGCTCCCAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTAATTCTCGGCTATCATGCTCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTAGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTACCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 155735-155287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEN010000001.1 Pectobacterium brasiliense strain NAK:468 AANNGEPD_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 155734 28 100.0 32 ............................ ACGGGCGCTGGCCTCCCGTATGTAAACACAAT 155674 28 100.0 32 ............................ AGGCACTGTCTCCTGTCGCTTTAAGGCCGCGG 155614 28 100.0 32 ............................ ACACCGTTACACCCGCGAGGAACTGGACGCGC 155554 28 100.0 32 ............................ TCTTGACCTGTAATGCCCTGCTTCCCACTGAA 155494 28 100.0 32 ............................ ACTCCCGCGTTGCATCGTCCACAGGGAAATCA 155434 28 100.0 32 ............................ CGATGTGCGCTCGGCCGGGAAAGAGGCCATTG 155374 28 100.0 32 ............................ TTCCCAGCCGACACTGTCGCAGTGCAGTCGGA 155314 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATTTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGATTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACCTTTTTAAGTAACGGGTTTCTTTGTTGGGAATGAAAAATTGCGTATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACTGATCCTGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 164314-166083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEN010000001.1 Pectobacterium brasiliense strain NAK:468 AANNGEPD_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 164314 28 100.0 32 ............................ ATACAGTCAGGAATGGAGGCTCGTACTAAACG 164374 28 100.0 32 ............................ GCAAGGCGGTGCGTAAAGCTGTCGCGCACATT 164434 28 100.0 32 ............................ TTTACGACATCAAAACCCAACTCGCGGTGATC 164494 28 100.0 32 ............................ AGACGGCAGTGTTGAAGCGGAAGAGTTACGTC 164554 28 100.0 32 ............................ ACCTCAACAAAGGTCACCATCAGTTAACATCG 164614 28 100.0 32 ............................ AATTAAGGGGATTATATCACACTCACGCTAGG 164674 28 100.0 32 ............................ TTTAAAATCACCTGACATACAAATACCCCTCT 164734 28 100.0 32 ............................ TGACTAAATTGGCTGCCGCGAATAAATCATTC 164794 28 100.0 32 ............................ ATGTGCCTTTGGGGTCTGCTGGCGTGACAGAT 164854 28 100.0 32 ............................ GCATTTCCGCATAGCACGTCGAATAAAGCGAG 164914 28 100.0 32 ............................ TCATCAAACCTTTAACCGCTGGAATAGAAACA 164974 28 100.0 32 ............................ CTGAAAAGCTGCCTTGCGCAGTAACCCTCGAT 165034 28 100.0 32 ............................ TCATCAAACCTTTAACCGCTGGAATAGAAACA 165094 28 100.0 32 ............................ TACAATTCCTTATCATCGTTTGCCGACTCGTA 165154 28 100.0 32 ............................ ATAAGACGATTACAGGATTCATTTCCACACCT 165214 28 100.0 32 ............................ AATGAATCAGGCGCATCCCTTCGTGCTGTTGG 165274 28 100.0 32 ............................ TTCCGGTATTGCCGGATGGTTGCCAGACTGGA 165334 28 100.0 32 ............................ ACTGTGGTTGCGCCGTAGCGTCCTGCATTCTG 165394 28 100.0 32 ............................ GGATCGCAATGTTGCGATTGTAGAAACGGGAG 165454 28 100.0 32 ............................ AGTCTGCCGACATTAATTCACCAAGCGCAATC 165514 28 100.0 33 ............................ AAGCCGAAAGAAAAACCTTATCGCCTGCTGGAT 165575 28 100.0 32 ............................ ATGACGTTAGCAAAATTACCCTCCCCCATCGC 165635 28 100.0 32 ............................ TTCACGATCCGCTTCGGTTCCAGCATCGAATC 165695 28 100.0 32 ............................ ATCTACCTGTGGGTGATTGTACGGTGCAGGAT 165755 28 82.1 26 ...........T...........TC.GT CAGGCAGCGTTAGCACTGGCGATATT TGAA [165775] 165813 27 89.3 32 T.........-T................ AGCTTGACGCGTAACGTAGCAACGTCGCCAGT TA,G,C [165816,165819,165830] 165876 28 100.0 32 ............................ GCAACGGCGTGCATCGTGGAATTAGGCAGGAG 165936 28 100.0 32 ............................ GCAGCGAAGACGATCAGTGGAAGGATTACGAC 165996 28 100.0 32 ............................ GATCTCGAAACAGAGCTGGCGCAGTTCATGAT 166056 28 82.1 0 .............C........C..TGC | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGCTGGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGTTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTAGAACATGGCCCGCTACAGGATGCTCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : CTTATCGAGATGCGTCGCTAGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGTATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACCAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGCCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66640-64229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEN010000008.1 Pectobacterium brasiliense strain NAK:468 AANNGEPD_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66639 29 100.0 33 ............................. CATTCGTTTTCCTTTTCCCGCTAGCTCGTCAGC 66577 29 100.0 32 ............................. ATGGGATACCCCTTGTTGAGGTTCCTCAAACC 66516 29 100.0 32 ............................. CGTACACAAGTTCATTTTTCAGTGGCAACGCC 66455 29 100.0 32 ............................. CAGCGCAAACATAGGTTTTGCGTCGTCAATGC 66394 29 100.0 32 ............................. TTGTTGCTATTTCCCGCCTGACTGCCAGCGGT 66333 29 100.0 32 ............................. GATGACTGGCTGATATCGCCCCGCGTCATAGG 66272 29 100.0 32 ............................. CCAAAAAATTAATCCAAATTCTCAACGCGGCC 66211 29 100.0 32 ............................. GGCCGCGATAGGAGATAATCAAGATGAAACAG 66150 29 100.0 32 ............................. CGCGGTCGGCGTGGTGAGGTTACGGCTCTTGA 66089 29 100.0 32 ............................. GGGCATACTCCAGAGATGGAATGGCCAGACCA 66028 29 100.0 32 ............................. ATCGCGCCACGTCCTGAAGTATTTCTATTGCT 65967 29 100.0 32 ............................. TCGCCAAGTCTAAAGAAATGAGCATCGTTCAG 65906 29 96.6 32 ............................T CAAAAAAAATCCCGCCGATTTCTGGGCGGGAC 65845 29 100.0 32 ............................. GCCCAGAACAATAAAATGTGGCCACTTTTAGA 65784 29 100.0 32 ............................. GAACGCCGTGGTTTCAGTCCATCCTCGGAAAA 65723 29 100.0 32 ............................. TTATCGCTGGGTGCCTGAATCGCTGCGCTGCT 65662 29 100.0 32 ............................. CCTGCCGAGTGTCGGCTTGGCTTTTTTGACCA 65601 29 100.0 32 ............................. TCGCCGCAAGGCGCTGCCCACGCACTGAACAC 65540 29 100.0 33 ............................. CTGTATTGTTTTGTATTGCGTAATATCGCTCAC 65478 29 100.0 32 ............................. CGTAGGTTTGGCTTTTCTTCTGGCTCCGTTGG 65417 29 100.0 32 ............................. CTATGAAGAAATGAAATTTTTCTGGGTGTGGG 65356 29 100.0 32 ............................. CACGTGGCGCATGGCATGAGCATTCCACCGAT 65295 29 100.0 32 ............................. GATGACGTTATCGAATCCCGCGCCGTTCCCCC 65234 29 100.0 32 ............................. AATGCTCGCACCAAGAACACCTACGACCGCGC 65173 29 100.0 32 ............................. ACTTGAGCGCGTGGCTTGTGTGATGTTAAAAA 65112 29 100.0 32 ............................. GATTATCGGTATAGTTACACTCAATGATGAGA 65051 29 100.0 32 ............................. CGCAACTACTGAATAACTCACCTCATCACCGT 64990 29 100.0 32 ............................. GAACGGAAGAGAAGATAAAATGCCAAAATCAG 64929 29 100.0 32 ............................. CGCGTCGTCAGCCTACTGTATGGGTTCGTCGC 64868 29 100.0 32 ............................. CCATAACCTATCTGATCGGTTTCTTCTTTTGG 64807 29 100.0 32 ............................. CACACCATTGCTGTTCCTCTGTCATCCACATA 64746 29 100.0 32 ............................. GTATTGCCTCTGGTGTTTTGCGCGGAGAGGAA 64685 29 100.0 32 ............................. GTAGGGAGATCATTCATTACAGGAGTTTCCTC 64624 29 100.0 32 ............................. CTGATCGGCTCAAGCGGCGTGGTATGCGTGTA 64563 29 100.0 32 ............................. CGCCTTTCTTTCGCCGCAACTGGACGCGAGCA 64502 29 100.0 33 ............................. GCCTTTTACTGATCTGTACTTGCAGTAATTCCC 64440 29 100.0 32 ............................. CGCTATGTCTATCCGGCATACAGTAATCATTT 64379 29 100.0 32 ............................. TGCAATCAGTGAATCACTCCCACCCTCCAGAC 64318 29 100.0 32 ............................. GCCAGCTATCCTCACCAGCTTCTGCGCGTAAT 64257 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTGCCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGTTGGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAACGGGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTATTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATGTCCCCCGCACGGAACCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTACGTGTCAGTATTAAAGCACGCCATTTTTGCACTCATCGTCACAGTGAGGCGCGATGCCAATGATTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCTGAAGGGGGAAGTATTCCGCCTTCCAACGTGTTCCAGCCGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEN010000097.1 Pectobacterium brasiliense strain NAK:468 AANNGEPD_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 93.1 32 -........T................... TCGCCGCTATGAGCTGCCAAAGCACTGATCAC 61 29 96.6 32 ..................T.......... AGTAGGTTTGGCTTTTCTTCTGTGTCCGTTGG 122 29 96.6 32 ......A...................... GGACGCGATAGGAGATCATCAAGATGAAACAG 183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGCGGTCTGCGTGGTTAGGT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //