Array 1 3048-1892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000004.1 Bacillus safensis strain 15-B04 10-15-3 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3047 32 100.0 33 ................................ TACTGGAGCATTAAGGAGTTGAGCTCCCATGTA 2982 32 100.0 33 ................................ TACTGGAGCATTAAGGAGTTGAGCTCCCATGTA 2917 32 100.0 35 ................................ CATGCTTTCTTAATTCGTTCAAAAGCAGCATAAAC 2850 32 100.0 34 ................................ CACACACAAGGGTTTCGAGGCTGGGAACGACTCA 2784 32 100.0 34 ................................ CATACAAGAGTGATCGCAGCGACCGCAACTTGTC 2718 32 100.0 34 ................................ CTTATGTTGGCTGGATTGCTACTGCTGCAGCTCA 2652 32 100.0 33 ................................ ACGACGGTTCGAATCCTTCTTTGTCGTTAACAG 2587 32 100.0 35 ................................ AATTATACCGCTCAGTATATGGAAGTGAGCAATGG 2520 32 100.0 35 ................................ AATTATACCGCTCAGTATATGGAAGTGAGCAATGG 2453 32 96.9 35 ....................A........... TTGAATAACTGACATTAGATCAATTCGACGATACA 2386 32 100.0 35 ................................ TTGAATAACTGACATTAGATCAATTAGTCGATACA 2319 32 100.0 34 ................................ CAAAAGTACGCAATGTACTTGATAGGCTTTAACG 2253 32 90.6 34 .....C....T...............G..... GTGTTGGCATCTATGACGGTGAGAAATACAAGGT 2187 32 100.0 34 ................................ CAAAAGTACGCAATGTACTTGATAGGCTTTAACG 2121 32 100.0 34 ................................ GTGTTGGCATCTATGACGGTGAGAAATACAATGT 2055 32 100.0 34 ................................ ACAAAACTCCAGCCTTTAACAATCATTCTTCCCA 1989 32 100.0 34 ................................ CTTTTGAGGTGATAGTATGTGGGATGAACGGAAG 1923 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ =================================== ================== 18 32 99.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Left flank : CCATTTCTTTGGAAGTAGGTGATGTTTTTTATGATGGTTGTGATTACGTATGATGTCAGTACAATTGATAGAGATGGGCAACGGAGACTAAGGAAAATATCGAAAATTTGTCAAAACTATGGTCAAAGAGTACAACATTCTGTATTTGAATGTATTGTAGATTCAACGGAATTTGCAACATTGAAGAATCAGTTGTTGCAAGCTATTAATGAAGAAAAAGATAGTATTCGATTTTACCAAATGGGTAACCAATATCGAAAAAAAGTAGAACAGGTTGGTGCAAAGGAAACAATTTTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAAATTCCCTGAAGCATTCGCACCTAAAAAGAAAGATTTTTCGACAAACTCTATCTCTATTTGTCTCAATAATTTATACTTTGTATCAACAGAAGGGACTTTTTTATCTGATTATCATAAAAAAGTGCTGTTTTATTTATTTTTTTACTGAAAATCGCT # Right flank : ACCCGGAACCGGATCAATGTACTCCTGTACCTTATGTCGCACTCTACTTTAAAATAAGAGGAAAAGGTTAGTTAATGCTAATGGAATAATTGCTGCGATAAACTTATGTAAAGGAAAGAGTGTTTAAGCGGTATTGATGAGAATTATTACCTTATGTAATAAGCTCAAGAATAGGAATAATAGTTTTTCATTGTTTCGTTTTTTGATGTTCTACCAGTTGAATGATTTTCTCGTTTGACCCTTTCATTTGTCTTAATAGAGAAACGGTAGTCCCTGTAAATCCTATAAGGATAATGTGCAAAATGATGATCATCCACATGCTCTGGCCTCCAATCGCTGACTACTAATACAGTATAATAAGAATGTATAAAATGAACAGTTCGTGTCATAAATCCGACATTTTATGTGAATGGAGAATGTTGAGGGGGATTTATTTGAAACGAGTAGACGTGGTTTCAGCTATTATTTATGACGAGGAAGAAAATATATTAACGGTCAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18254-17893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000009.1 Bacillus safensis strain 15-B04 10-15-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18253 32 100.0 34 ................................ AGCTTGGCTTTTTCCTTTGCTCCCTTTTGGTAAG 18187 32 96.9 34 ...........A.................... ATGGGCGGACGATCCTTTGAAAATTGTTCCGAAG 18121 32 100.0 34 ................................ ATTTCTTTTAGTTTCGAAAGTCTTACAGGAGTCA 18055 32 96.9 33 ....T........................... ATTGTTATGTACAAAACCTTTATCAAGAATGCT 17990 32 90.6 34 ..........CC...A................ ATCATATCTTCAACCGAATTACGCAGCGTCATCA 17924 32 71.9 0 A.........CC...A....A.A...CAC... | ========== ====== ====== ====== ================================ ================================== ================== 6 32 92.7 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : TTATTAGAACGGCTTTTATACCAAGCCCGTCGCACTCTATATGAGTGCGTGGATTGAAATTCAAATGGCAACAGGGTGCTTTTTCTTTTCATGCGTCGCACTCTACATGAGTGCGTGGATTGAAATAACTTGTACACTTTTTTTGTTTCGACTTTTATAGGGTCGCACTCTACATGAGTGTGTGGGTTAATAATTGCGAAAAACATAACTCTGCTTCCTGACTCAGTAGCCATGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTAAATAATTAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATTATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCAAATTATATAAAGTCAAATACTTATCCATTTCAAAATCTACACAAATGAATAATTAAAATAATGTACTTCCCCCCTAAATCCAAGCCCTAAACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATATTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACTCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGG # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19845-19213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000009.1 Bacillus safensis strain 15-B04 10-15-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19844 32 96.9 36 .....T.......................... AGACATTTGTTTTTGATAAGCACCGTAATTGATAAA 19776 32 100.0 35 ................................ ATGGCGGTGTTTTTCTGTTTTATCTAATGCGTCCC 19709 32 100.0 35 ................................ ATTCGAGAATGAATGAGCATTTGAAGAACTATCAT 19642 32 96.9 35 ......G......................... ATGGCGGTGTTTTTCTGTTTTATCTAATGCGTCCC 19575 32 100.0 33 ................................ TTTGGTCCGCATTAATACATATTTGCCGTTATA 19510 32 100.0 34 ................................ AAAATCATCCCCCCCATTTTATCCAAACAAAAAG 19444 32 100.0 36 ................................ CTGTGACAGCTGCAAGAGGCAAAGGTACGCCATCTT 19376 32 96.9 33 ...................T............ TTAGCGCTTTCTACGTCACATTTTCTAATTGCT 19311 32 96.9 34 ....G........................... AAAACAACTCTTTGATTTCAGCTTTTAAGAAGAA 19245 32 90.6 0 ............G......G.......A.... | T [19216] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.8 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCAGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGATGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTAGAACATTCGCACCGTTTCATGCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGAACATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACCAGGTTCAATAGATTTCATACTAAGACACAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATTAGTGCGTGGATTGAAATTCAGCTTGGTAGAACGGCGTTTATTCCAAGCCCGTCGCACTCTATATGAGTGCGTGGATTGAAATATTCAGTCTTGATCCTTGCCCACTTCTAAACTCTGTCGCACTCTATATGAGTGCGTGGATTGAAATTCAGCTTATTAGAACGGCTTTTATACCAAGCCCGTCGCACTCTATA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28669-28037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000009.1 Bacillus safensis strain 15-B04 10-15-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28668 32 100.0 36 ................................ CATAATATTGCCTGATCCTGCATATGCATAACCCCT 28600 32 100.0 33 ................................ TAAAAAGTAGAACAAGTAGGTTATTGGCTTCGT 28535 32 100.0 35 ................................ TTGTTTAATTCTCCAGTAAGATAAGCCGCCGCCGC 28468 32 100.0 36 ................................ CATAATATTGCCTGATCCTGCATATGCATAACCCCT 28400 32 100.0 34 ................................ ACGAATAAAGCCGCGTTACCTGCCTTAATGTCAA 28334 32 100.0 35 ................................ TTGAAGTAGATGTCCCAGTGATGCTGATGGCCAAT 28267 32 100.0 35 ................................ TTTTAAATGTTGTTCCATATGATTAAAGTATAGAG 28200 32 100.0 35 ................................ TTTTAAATGTTGTTCCATATGATTAAAGTATAGAG 28133 32 100.0 34 ................................ CTTTAATCGTTTCAATGATTGTGTGACCGTGTTC 28067 31 84.4 0 ...........A.......T.A.-.......C | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.4 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATATATGATCTAGCGTTAATTTTTGTGTTGTCATGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTGTGGTGTTGGGTATTTTTTGTAGTGTTCTTCGGTCGCACTCTACATGAGTGCTTAGCCATTCTTGATTTTAGGTAAGAGAAAACATAGTTAAAGTTAAAGCATGTATGTTTGATCGGAAATTATTAGTGGAGTAACTATACTGATTAAAATTTACTTTTCCTCAAAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAGAGTCAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : CCTCATCAGTAGGTAGCTAGAAATATATATTGACAATTGTGCTTGATATAGGTGTGAAAAAACATGACTGACTCAATAGTCATGTTTTTTATGAATTCAAAGCTGTTGATGAAACACTGAAATAAGTATAATTATCAAGAGTAATAGTTGTTAATTAAAATTAAATAGGATTAAAAAGATTCGGTGCGAATGTGGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGCCAAAATGTATATTTTCTAGAGGTGAACACAAAATTCCATATAGAAAATTGCGGGTTTTGGCTATCATTTCCTAAACAATGTTACAATTAGGGTGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATATCTTGATCACTAACGAGTTTTAAAGAGCCTGGAAGTCGCACTCTATATGAGTGCGTAGATTGAAATTGGGTTGTCAGTGATAAGTGAGTGAATTTCCGAAACGTCGCACTCTACAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 29855-29558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000009.1 Bacillus safensis strain 15-B04 10-15-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 29854 32 100.0 35 ................................ CATCCCTTTTTAATCGGAATTGATAAGAAGAAGGG 29787 32 100.0 35 ................................ CATCCCTTTTTAATCGCAATTGATAAGAAGAAGTG 29720 32 100.0 33 ................................ AGCAAACTATCGAAGTGTACAAGTGTTCCCATG 29655 32 93.8 34 ...........C.A.................. ATCTGCTTCCATACCAATCCACCGAGATACTAAC 29589 32 84.4 0 ...........C.......TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GGCTACTGGCGCACCACGTCGCACTCTACATGAGTGCGTGGATTGAAATATGCAGTGCGTCCTTAGTGGATTGAGAGATAAGGTCGCACTCTACATGAGTGCGTGGATTGAAATATTGACGCTGTACTTTCATATAGGCTGTCATAGTCGTCGAACTCTACAAGAGTGGATGGATTGAAAATTTGAATTGGCAGCATCATAGACCAAGCACCCCCGGACTGGCCCAGTAGTCCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATAATAATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATATATATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGAGGAAATCGCA # Right flank : AGCTTGAAAGAAATGTTGACAGTAGCGCTTGATTTATGGGTGAAAAACATGACTCTGGCTCAGTAATCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCTGTGCGAATGTGAGGTGGACACAAAATCCCCGGGACATTCGCACCTTCTCATTCGACAAAAATGACAAAAAATGTATATTGTTTAGAGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTACAATAAGGTCGGAAATCGCAGTCGCATTCTATATGAGTGCGAGGATTGAAATTACCCATCTTTTCAACATGGAATACTGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATATATGATCTAGCGTTAATTTTTGTGTTGTCATGTCGCACTCTATATGGGTGCGTGGATTGAAATTCT # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 30599-30174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZTQ010000009.1 Bacillus safensis strain 15-B04 10-15-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 30598 32 96.9 32 C............................... CATTGATGACCTTTCGCGCGTCTCCCAGTGGG 30534 32 100.0 32 ................................ CATTGATGACCTTTCTCGCGTCTCCCAGTGGG 30470 32 100.0 34 ................................ ATTTACATCACCTCCTTTAAAGTTTGAGCCTTGC 30404 32 100.0 35 ................................ ACCAGCAGGAGCAATTTTGGCTACTGGCGCACCAC 30337 32 100.0 33 ................................ ATGCAGTGCGTCCTTAGTGGATTGAGAGATAAG 30272 32 100.0 35 ................................ ATTGACGCTGTACTTTCATATAGGCTGTCATAGTC 30205 32 84.4 0 ....A........A.....GA..........A | ========== ====== ====== ====== ================================ =================================== ================== 7 32 97.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAAAAACAGGGGGAGATGTCCGTGCCCGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGTGAACTGATGGTGCGAATGTGAGGTGAACATAAACCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTGTGAAGGGAAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTGTCTTTCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTTGAATTGGCAGCATCATAGACCAAGCACCCCCGGACTGGCCCAGTAGTCCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATAATAATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATATATATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGAGGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCATCCCTTTTTAATCGGAATTGATAAGAAGAAGGGGTCGCACTCTATATGAGTGCGTGGATTGAAATCATCCCTTTTTAATCGCAATTGATAAGAAGAAGTGGTCGCACTCTATATGAGTGCGTGGATTGAAATAGCAAACTATCGAAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //