Array 1 1770633-1769399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012946.1 Blastochloris viridis strain ATCC 19567 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1770632 37 100.0 37 ..................................... CTTCCAATCGACTTGCCGGCATCAAGCGATACGCTGC 1770558 37 100.0 39 ..................................... ATCCGCAACTGGGAAAACGTCAAGGCAGTGGTGGGCGGC 1770482 37 100.0 38 ..................................... CTAGGTGACCTGTCCAACACACCAAAGCTACCAGACCA 1770407 37 100.0 38 ..................................... GGCGTTTGGGACAAGGGGTGGAACGCGGCGGCCGAGAA 1770332 37 100.0 37 ..................................... GACCACCTATCAACGGCCATTGAGCGGCTCATAAGCA 1770258 37 100.0 39 ..................................... GCTTGTCAGGCTCAGTATTCAACAAGCCAACGCGTGTTA 1770182 37 100.0 41 ..................................... TTGGAACTGAATTGGGATGGACATGGCCAGGGTCGGTCACG 1770104 37 100.0 36 ..................................... CTCGACACCGGCGAGCTGATTACAGCGCCGCTGGCG 1770031 37 100.0 38 ..................................... ACGCCACGACCGAAGGCTGGCTTTGCGGATGCACAGAC 1769956 37 100.0 37 ..................................... CAGAAGGTCGTGTGACGCCGACCGCTGAAGATGCGGC 1769882 37 100.0 41 ..................................... GCGCCCCCCAGCACCGCGGTCGCCTCGGCCGAGGCCAGGGA 1769804 37 100.0 36 ..................................... GGCGTGCGCGGCCGGCGGGCGTCCGAGGTGACGGCG 1769731 37 100.0 39 ..................................... CAACTCACCCTCGACAACGGATTTTCGCTCACCGCGCCT 1769655 37 100.0 35 ..................................... AGCGTCAGCTCCACCGCCTTGTTGAGGGTCTTGAT 1769583 37 100.0 36 ..................................... CCGGCGCTGCCGGACGGCGCGGAGGTGCTGCACCGG 1769510 37 100.0 37 ..................................... GCGGCGACATCGTCGGTGCGGGCGCGGCTCTATCGCG 1769436 36 81.1 0 ....................G..T...-.GG...C.G | AC [1769411] ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 98.9 38 GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Left flank : GAAATAAAGTACGATAACCAAAACCATGAAAGTGTCAGATCTGATGCAACCAGATCGGAAAAATACTCTAAATTTGAAATTATTATCCCTATATGTCCTCACGTCCAATCAGACTCCTGGGAGGACGCCCCCCCCGAAAACCCTGAGTTCAAGCAGGAATTTTCGGCGATGCCGGTTTCAAGACTGCGGATGGACCTTCCGGACCTCGCCTGAGAAGAATCTCGTCTCGTCCGGCAGTCACTCGGATCTGCGATCCCCGCTGTCACAATCGTCGGCGCTGACCCCGCGTTCGGAACGTGCCGCCTTACGGCGCGAGCGCTGCCGTGATATGCATTTCTCCCGTAAGCGCTCGCAGCTGTTTAGATCCTTGAATTTGAAGGGCTGTTTGCCAATGTGAAATACGTTCATGCCTTGTCGCACGTTGCGAGGCGAGACCGTTGACGCAGCTCTCGCAAGTACCTGTCTATTCTCCTGCGTAATCGAGCAAAAATCTGGCAGGG # Right flank : CGCTGGGCTTCATCGCGACGGTCAACGTGACGCGCAAGCTGGGCGTGATCCTGCACGCGATATGGCACGCAGCACCTGCTACGTCCGCGACCCGATCGTCTCGCGGCGGCTGCGGCTGTGCCGTCACCCGTTCGATCCGGCCGATACGTCCGCCGCGCCGGACCGATCCGTGCCGCCGCCGTCTCGGCCACGCTTGAACGGCCAAATCCCGCCCTACAACGGCAAGGGCCGGGTGCGCTGCTTCGCGGCAGGCGCAGCCGCGGAGGCGAGGATGCCGTTCATCGAGCCTAAGCCCATCGCCGAATACCCCTGGTACCTGCGGCTGTTCTTCCGCAACCAGGTCCGCCGCTACGGCCAGGTGCTGTCGCCGTCCTGGCTGTGGGGGCGGCTGCCCGGCCATTTCCTCGGCCTTCTGATCCTGCTTGGCCTGTTCCAGCGCCGCGCCTTCCCGATCGACACCGCGCTGCGCAGCGCGCTGTCGGTGCGGGTGGCGCAGATCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 2294724-2296180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012946.1 Blastochloris viridis strain ATCC 19567 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2294724 36 100.0 37 .................................... CCTGCGCGCCCTCTCCCGTGCCGATCCTGGATAGGTG 2294797 36 100.0 37 .................................... CGGATCGACGCTGAAGCCCCAATCGGCGCCGAACAAG 2294870 36 100.0 38 .................................... GCTCCAGGTAATGCGCCAGCACCTCGCCGATATCGGCC 2294944 36 100.0 42 .................................... AACGAGATGGCCGACCGCAACGACATCCGGGCCATCACGCGC 2295022 36 100.0 39 .................................... GGCGGTCGCCCACGTCATGCAGGAGGGCTGACCATGGCC 2295097 36 100.0 39 .................................... TTGCGCTGCCAACCCGCGCGACCATGGGGCAGTGGTACC 2295172 36 100.0 38 .................................... CGCCCGTCCCGGTCGCGGCGGCTCACGAGTACGCAGAG 2295246 36 100.0 37 .................................... GATCAAGCCGCGCAAGGACAAGACGACGCCTCAGCTG 2295319 36 100.0 39 .................................... CTCCCGATCAGTCGTCACGCTGTCATCGCGCATATTGGG 2295394 36 100.0 37 .................................... GGTGCGGCTGTCGGAGACCATCGAGACCACCTGGGCG 2295467 36 100.0 40 .................................... CCCGGATCATGTAGGCCCCGGTGTATACCTTGTTCCCGGG 2295543 36 100.0 38 .................................... CCACCCATTTAACGGGGGCACCAAACAGCCAGTGGTCG 2295617 36 100.0 38 .................................... CCAGGATGTCGGACCCGAGCTGGGTGCCGATGGCCACG 2295691 36 100.0 40 .................................... CGCGGTGGACACCGGCGTCACGACGCGGCGCGCGCTCCAG 2295767 36 100.0 39 .................................... CAAGCCCGCTGCGTGACGCCTCCCTGCTGGTGGTGGACG 2295842 36 100.0 41 .................................... CCTGCCGGGCGACGCGGATTGCCGCGGCGCGCAGTGCCGTG 2295919 36 100.0 39 .................................... CCGCGGCCGGGGTAGGCGTCGGTGCCCACCAGGAAGCGG 2295994 36 100.0 38 .................................... CATCGAGATGGCGACGGCTCATCTGACCGATGACGAGG 2296068 36 100.0 41 .................................... CCGTCTCGACGCGAGTGAGCGGCTTGAAGCTGATGGAGGCG 2296145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 100.0 39 CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Left flank : CGTCGGCCAGGCTGCGCGTCCGGCGCGCCCATTTCGGCAGCAGCGCCGAGCTGAACCGGATTTTCTGCGCCGCCGGCACGTCCAAGCGGTCACGAACTTTCGCACGCTGAACCGCCACCGGCCCGATGCCGGTCTGGATCAGCCGCTCCGGGCCGTGCCCGTGCCGCACCATGCGGTCACGGCCGTCGGCCAGCTTCTCGGTCTTCAGGTCGCCCAGGAAGGCCGCAACCTCAGCCTCGATCGCCTGGGCCAAAAGCTGCCGCGCACCCGCGCGCAGCACCTCGGTCAGGGGATCGTCGATCTCGCCGGGCTGACGCAGCCGGACGACGGTGATAGTTTCACTCATGGCGTATCGCTCTCCTCTGGAGGGGTTGGGCAGGCTGGTTACCCGCCCCGATACGCCGCCTCTCTCACACCGTCATCACCCAGTTCCGGCCATAGCTCCGTGCTGCTCGGGAAAGGCTTGTCGGTTGCGGCGTGCAGAAGCCGCATCCCCACAG # Right flank : CCCGCCCCCGCCATTTCCGAAGATCGTTCCGGGGCTTGCCGTGCGGGATGCGAGCGGTGCTGCCGGTCGCGTTGGCCGGACCGCGACGAAGCATGTTCGAACGTCTTTACGATGTCAAATAGCGTCGTGGCTACCGCGACTTGCGCCGATGCGAGCGCTGCCGCACAAATCTGCCTCGCCGCAGCGCTCGCGTCCAGGCCAGGCCATCGCCAGGACGCGATCATCGCCCTGCCGGCGGGTCGGGCCGCGCGGTCATGCGGTTTTCGGATGATCCGCTCGGCCCCTTTTTTCCGCTTTCCCACCCGGCCAGGCTTGCCTGCGTCCGGGCGCAGGCTGTTGTGGGAGAGGATGCCGAGCAATCGAAGATCGTGAGGCGGGTAAAACCGAGCCGGCTTGAAAAGCTCACCCGGCGCGGATTTCGCTTCGCTCATCCTCGCCGACCTCTCCCGCAAGGGGAGAGGGAAAAGGAAGAAGAGACCGAACTGACCAGCCGCAAAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 2460356-2463755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012946.1 Blastochloris viridis strain ATCC 19567 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2460356 32 100.0 33 ................................ AGCCGGCGGATGTCGCACTCGATGTCGGAAAGC 2460421 32 100.0 34 ................................ GACGGTGCCGTCAGACTGTTGCGTCATCGATAGG 2460487 32 100.0 33 ................................ CGCGCCCGCGCCAGGCAGTTGCGTGACGAGCTC 2460552 32 100.0 34 ................................ GCCCGGTACATGAAAGAGGCCATCAGCAACGGTG 2460618 32 100.0 34 ................................ CGATTGCCGCCGCGCCGGTGGTGGTGCACGGCCA 2460684 32 100.0 32 ................................ AACAGCGTCGTGGGTCTTGACCGTGGCATAGC 2460748 32 100.0 34 ................................ CGGGAGCACATTCAGCACGAGGTGCTGGTCGACA 2460814 32 100.0 34 ................................ ATGCCCCAGCCGAATTTCTCGTTCTGGGTATCGG 2460880 32 100.0 35 ................................ GGACTCGGCGCGGTCGACTGGGCCACAGCCGAGCC 2460947 32 100.0 36 ................................ CCCGGCTACTACTTCGTCCGGCTCGACCTCGCCGAC 2461015 32 100.0 34 ................................ AAAAACCGCGGTGACATTTTTCGCGTGGTCGAGG 2461081 32 100.0 35 ................................ ACCTCGGCGATCTCGACCTTGGCGACCTCGGCCTC 2461148 32 100.0 33 ................................ GCCATGCCTCGCCGTCTCGGCGGTTTTGGTCGT 2461213 32 100.0 34 ................................ ATCTCGACCAGATCGAGCTTACCGTCCTCGCCGA 2461279 32 100.0 33 ................................ ATTGCCATGATCGTGTTCCTTAAGCGGTGCCAG 2461344 32 100.0 34 ................................ TTGGGGGCCTTGGGGCCGGTCCCCGTGAAGATGC 2461410 32 100.0 35 ................................ TCGTTGCTCCGGCTCGACATCGCCGATCCGCGATG 2461477 32 100.0 35 ................................ CAGCATAGGGCCGGTCAGGTTGACCCCGGCGAGGG 2461544 32 100.0 33 ................................ ACCTCCGAGACCTTCGCGAAGGGCGCCGCCTAT 2461609 32 100.0 33 ................................ ATCTACCACGCGCTGACACGGTCACCTGCGATC 2461674 32 100.0 34 ................................ TCGATCTCCGCCCGCCAGTGGGCATCGCGCTCCG 2461740 32 100.0 34 ................................ TCGATGATGCCGATCGGCGGGTGCTATTTTGTGC 2461806 32 100.0 35 ................................ CGCGTCGGCCGCACGGCCTGATCGATTTCGTCGGC 2461873 32 100.0 35 ................................ CTCCTCACCGCACCCGAGATGGCGCAGCACGACGC 2461940 32 100.0 34 ................................ GACGGCAAATCGAACAGCAGCAACGCGCGGTCGG 2462006 32 100.0 35 ................................ CCCTTGGCCGGCGCCCAGGCCGCCTTCCGGCGCGC 2462073 32 100.0 34 ................................ CGGTGTCGCTCGCTGACCCGGTCGGCGTCACCAA 2462139 32 100.0 34 ................................ GGCGACCGCCAGCCCGGTCAGCGGCTTGCATGGC 2462205 32 100.0 34 ................................ GTCGTCGCTGTCGCCATCGGCGATGACGCGGATC 2462271 32 100.0 35 ................................ CGCACGAAGCGGTCACGCGTCACCCGCTCGGCCAC 2462338 32 100.0 34 ................................ CTGGTCAATTCGTCGTCGTCCTGGTGGCGGTCGG 2462404 32 100.0 35 ................................ GGTTTCAAATTTGCGCGACATCGTGGCCCCCGGCC 2462471 32 100.0 35 ................................ AGACTGCCGAGAAGTATGCCGGGCGTGGAGACGGT 2462538 32 100.0 36 ................................ TATGAGCGACTGCACGCCAAGTGCGATAACACTACC 2462606 32 100.0 34 ................................ ACGTTCTCCCAATTGCGCACGATCAGCGCCGCGC 2462672 32 100.0 32 ................................ CTCGCCGCGCCAATCAAACTCCTCCGCTTGAA 2462736 32 100.0 34 ................................ GGCGTAGACCTGCGACACCTTGGTCACCTGTACC 2462802 32 100.0 34 ................................ GGTACAAGCCGGTGCGGCTGCTCTGGCCAAATGG 2462868 32 100.0 36 ................................ TTTGATTGCGATCGCCACCCCGCGCTTGGCCGCCAG 2462936 32 100.0 34 ................................ TGCTGACCGGCTCAGCACGCTCAAGAGCGTTCTG 2463002 32 100.0 33 ................................ CGCGCATGCATCGAGATAGCCTCGGCGTCGTGA 2463067 32 100.0 32 ................................ GATCCGTGACATGCCCCGACAATAATGGGCAA 2463131 32 100.0 35 ................................ GAAGTCGAGCCCGCCGTCGTCATCGCCGCGGCAGC 2463198 32 100.0 33 ................................ CGCCGCCATGGTGTCGTCGCGCGCTGGCCTGGG 2463263 32 100.0 33 ................................ AGCGCCAGCACATAGGCGCCGCTCTCGCGCCGG 2463328 32 100.0 35 ................................ GTCGTCCTCGCCAGCATTTGCAGCTGGGGTGCTTG 2463395 32 100.0 36 ................................ CCTAGAGAGAGATTTGGGGGTCAAGAACAGCAAGCG 2463463 32 100.0 35 ................................ CGGTCGCGGACGGCCTTGGGATCCTCGACGATACC 2463530 32 100.0 34 ................................ ACCTCACGCGCTCCGGCGCCTCGGGTGATCGAGC 2463596 32 100.0 34 ................................ GACAGCCCGTCACGGGCCGCGACCGCCCGAACCT 2463662 31 96.9 32 ............-................... AGGAAGCCGCCCGCCACCTGGCGGGCGCTCGT 2463725 31 96.9 0 ....-........................... | ========== ====== ====== ====== ================================ ==================================== ================== 52 32 99.9 34 GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Left flank : GTTCTGGTCACCTACGACGTCCGGACGTCCGATGCCGGCGGGACAAAACGTCTGCGCCGGGTGGCGAAGGCCTGCCGCGACTATGGACAGCGCGTGCAGTATTCGGTGTTCGAGATCGAGGTCGACCCGGCGCAGTGGGCAGCGCTCCGCGCGAGGCTGGAGGCGGTGATCGACCCGGCCCATGATAGCCTGCGCTATTATCATCTTGGCGCCAACGGGCAGCGCCGGGTGGAGCATGTCGGCGCCAAGCCCAACCTTGATCTCGACGGACCGCTGATCGTCTGAGCGGCGCGTCGAGGTTTCGGCGGCCCGGCGGCACGGTGCGCGAACCACAAGCGTGACCGCGCCCGGCGACACGTTCGCGCCAGTCCTAATAACCTGAAATTGCTATCGAAACATGGAAATTGGCGACACGTGCGGTCGCCGGGCGACCTCGCGCACCGAGGTTCGCGCATCCATGACCGTTTCGAACGTCAGGTTCGTGCGCTATCTGTAGGGCC # Right flank : CATGTCCAGCGAAGCGCGTTCTCAACCGTTCGCGACAAACGGTTTCATGATGGCGCCGCCTTCCTCAAGACCGAGAGCGGCTTCTGTGTCCTGCTGGTCAAGGCGCGCGGTCACCGGGACGCCGCCACCGTGGTCGGCCACACCGGGACGATTTCATCCGGCGAGCGGATTGCTTCACCGAGGCAGAATTCCGCGCGTGAACAAGCCGATGCAGCTGCGAAGATAGCGGATGCGCTCCTGGCGGTCCGGCCACTCAGGATCGCAGCCTTGAAGTTTCAAGGCCACCGCCCCGAACATCAGGTCCATGAGGGCCTTGGCTGCGACATTGGCATCGGCCACATCGATACGGCCGCGCATCCTCTGCATCTCCAGCCATCTGGCGAGGTCCTCGCGCGATCGTTCACCGCCGCGCTCCCGCAGCAGCGCGCGCAGTTCGGGGAACTCCCGCGCCTCGACGACAACGAAGCGGATCAGAGCCATCCGCTCGCGATCGGCCTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //